Construct: ORF ccsbBroadEn_11685
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009224.1_s300c1, BRDN0000397370
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DCUN1D4 (23142)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_024453945.1 | 100% | 100% | |
| 2 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | NM_001287757.1 | 84.9% | 84.9% | 435_539del |
| 3 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_011534380.1 | 84.9% | 84.9% | 435_539del |
| 4 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_024453941.1 | 84.9% | 84.9% | 435_539del |
| 5 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_024453942.1 | 84.9% | 84.9% | 435_539del |
| 6 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_024453943.1 | 84.9% | 84.9% | 435_539del |
| 7 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_024453944.1 | 84.9% | 84.9% | 435_539del |
| 8 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | NM_015115.3 | 76.6% | 76.6% | 1_180del |
| 9 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_017007912.2 | 76% | 76% | 1_186del |
| 10 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | NM_001040402.3 | 67.4% | 67.4% | 1_180del;615_719del |
| 11 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_011534379.2 | 67% | 67% | 1_186del;621_725del |
| 12 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_005265731.3 | 65.4% | 65.4% | 1_312del |
| 13 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | NM_001287755.1 | 58.6% | 58.6% | 1_312del;747_851del |
| 14 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XM_017007913.2 | 50.4% | 50.4% | 0_1ins240;195_299del |
| 15 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_001741177.2 | 13.7% | 1_291del;726_886del;1044_4299del | |
| 16 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_001741180.2 | 13.7% | 1_291del;726_890del;1048_4303del | |
| 17 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_245254.3 | 13.6% | 1_313del;748_908del;1066_4321del | |
| 18 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_001741176.1 | 13.6% | 1_313del;748_912del;1070_4325del | |
| 19 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_001741179.2 | 13.6% | 1_291del;726_917del;1075_4330del | |
| 20 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_427521.3 | 13.5% | 1_313del;748_939del;1097_4352del | |
| 21 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_941046.2 | 13.4% | 1_313del;748_984del;1142_4397del | |
| 22 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_001741178.2 | 12.8% | 1_291del;726_1181del;1339_4594del | |
| 23 | human | 23142 | DCUN1D4 | defective in cullin neddyla... | XR_001741175.1 | 12.8% | 1_313del;748_1203del;1361_4616del | |
| 24 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503627.3 | 77% | 81.8% | (many diffs) |
| 25 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503628.3 | 77% | 81.8% | (many diffs) |
| 26 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503629.2 | 77% | 81.8% | (many diffs) |
| 27 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503630.3 | 77% | 81.8% | (many diffs) |
| 28 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503631.2 | 77% | 81.8% | (many diffs) |
| 29 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503633.3 | 77% | 81.8% | (many diffs) |
| 30 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503634.3 | 77% | 81.8% | (many diffs) |
| 31 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503636.3 | 77% | 81.8% | (many diffs) |
| 32 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503637.3 | 77% | 81.8% | (many diffs) |
| 33 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503638.2 | 77% | 81.8% | (many diffs) |
| 34 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | NM_001190733.1 | 69.5% | 73.9% | (many diffs) |
| 35 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_017320580.1 | 68.7% | 71.9% | (many diffs) |
| 36 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XM_006503626.2 | 65.9% | 70.1% | (many diffs) |
| 37 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | NM_178896.5 | 61.1% | 65% | (many diffs) |
| 38 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | NM_001190734.1 | 58.3% | 62% | (many diffs) |
| 39 | mouse | 100737 | Dcun1d4 | DCN1, defective in cullin n... | XR_376792.2 | 12.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 657
- ORF length:
- 591
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC ACCAAGGAAA AAGAGAAGAC CTGCCTCTGG AGATGATTTA TCTGCCAAGA 121 AAAGTAGACA TGATAGCATG TATAGAAAAT ATGATTCGAC TAGAATAAAG ACTGAAGAAG 181 AAGCCTTTTC AAGTAAAAGG TGCTTGGAAT GGTTCTATGA ATATGCAGGA ACTGATGATG 241 TTGTAGGCCC TGAAGGCATG GAGAAATTTT GTGAAGACAT TGGTGTTGAA CCAGAAAACG 301 TAGTTATGCT TGTCCTAGCT TGGAAATTGG ATGCACAAAA CATGGGTTAT TTTACTCTAC 361 AGGAGTGGTT AAAAGGAATG ACTTCTCTCC AATGTGATAC AACAGAAAAA CTCAGAAATA 421 CTTTGGATTA CTTAAGATCA TTCTTAAATG ATTCTACAAA CTTTAAACTT ATTTACAGAT 481 ATGCGTTTGA CTTTGCACGG CAATCAAAAT ACAAAGTTAT TAATAAAGAC CAGTGGTGCA 541 ATGTCCTAGA GTTTAGCAGA ACAATTAATC TTGACCTCAG CAACTATGAT GAAGATGGAG 601 CATGGCCAGT TTTGTTGGAC GAGTTTGTGG AGTGGTATAA AGACAAACAG ATGTCCTACC 661 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 721 aac