Construct: ORF ccsbBroadEn_11700
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017010.1_s300c1, BRDN0000456805
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NUP210 (23225)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23225 | NUP210 | nucleoporin 210 | XM_017006021.1 | 98.1% | 98% | (many diffs) |
| 2 | human | 23225 | NUP210 | nucleoporin 210 | XM_011533538.2 | 93.9% | 93.7% | (many diffs) |
| 3 | human | 23225 | NUP210 | nucleoporin 210 | XM_005264994.3 | 92.8% | 90.5% | (many diffs) |
| 4 | human | 23225 | NUP210 | nucleoporin 210 | NM_024923.4 | 50.8% | 50.3% | (many diffs) |
| 5 | human | 23225 | NUP210 | nucleoporin 210 | XM_024453411.1 | 49.3% | 48.7% | (many diffs) |
| 6 | mouse | 54563 | Nup210 | nucleoporin 210 | XM_006506400.3 | 43.5% | 44.2% | (many diffs) |
| 7 | mouse | 54563 | Nup210 | nucleoporin 210 | NM_018815.2 | 43% | 43.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2967
- ORF length:
- 2901
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGCGGGGC CGGGGGCTGC TGCTGCTGAC GCTGTCGGTG CTGTTGGCGG 121 CGGGCCCCTC CGCCGCTGCG GCCAAGCTCA ACATCCCCAA AGTGCTGCTG CCCTTCACGC 181 GGGCCACGCG CGTTAACTTC ACGCTGGAGG CCTCGGAGGG CTGCTACCGC TGGTTGTCCA 241 CCCGGCCGGA GGTGGCCAGC ATCGAGCCGC TGGGCCTGGA CGAGCAGCAG TGCTCCCAGA 301 AGGCAGTGGT GCAGGCCCGC CTGACCCAGC CTGCCCGCCT CACCAGCATC ATCTTCGCAG 361 AGGACATCAC CACAGGCCAG GTCCTGCGCT GTGATGCCAT TGTGGACCTC ATCCATGACA 421 TCCAGATCGT CTCCACCACC CGCGAGCTCT ACCTGGAGGA CTCCCCCCTG GAGCTGAAGA 481 TCCAGGCCCT GGACTCCGAA GGGAACACCT TCAGCACTCT GGCTGGACTG GTCTTCGAGT 541 GGACGATTGT GAAGGACTCC GAGGCGGACA GGTTCTCAGA CTCCCACAAT GCGCTGCGAA 601 TCCTCACTTT CTTGGAGTCT ACGTACATCC CTCCTTCTTA CATCTCAGAG ATGGAGAAGG 661 CTGCCAAGCA AGGGGACACC ATCCTGGTGT CTGGGATGAA GACCGGGAGC TCCAAGCTCA 721 AGGCTCGCAT CCAGGAGGCT GTCTACAAGA ATGTACGCCC TGCAGAAGTC AGGCTGCTGA 781 TTTTGGAAAA CATCCTTCTG AACCCGGCCT ATGACGTCTA CCTGATGGTG GGAACCTCCA 841 TTCACTACAA GGTGCAGAAG ATCAGGCAAG GGAAAATTAC AGAACTCTCC ATGCCTTCCG 901 ATCAGTACGA GTTGCAGCTT CAGAACAGCA TCCCGGGCCC CGAAGGAGAC CCAGCCCGGC 961 CGGTGGCTGT CTTGGCCCAG GACACGTCGA TGGTCACTGC ACTGCAGCTG GGACAGAGCA 1021 GCCTCGTCCT TGGCCACAGG AGTATTCGCA TGCAAGGTGC TTCTAGGTTA CCCAACAGCA 1081 CTATCTACGT GGTCGAACCT GGATACCTAG GGTTCACTGT TCACCCTGGT GACAGGTGGG 1141 TGCTGGAGAC CGGCCGCCTG TATGAAATCA CCATCGAAGT TTTTGACAAG TTCAGCAACA 1201 AGGTCTATGT ATCTGACAAC ATCCGAATTG AAACTGTGCT TCCTGCTGAG TTCTTCGAGG 1261 TGCTCTCGTC CTCCCAGAAT GGGTCATACC ATCGCATCAG GGCACTAAAG AGGGGACAGA 1321 CGGCCATTGA CGCGGCCCTC ACCTCTGTGG TGGACCAGGA TGGAGGGGTC CACATACTAC 1381 AGGTGCCTGT GTGGAACCAG CAGGAGGTGG AAATTCACAT CCCGATCACC CTGTATCCCA 1441 GCATCTTGAC ATTTCCGTGG CAACCAAAGA CGGGCGCCTA TCAGTACACA ATAAGGGCCC 1501 ACGGTGGCAG TGGGAACTTC AGCTGGTCTT CGTCAAGCCA CCTGGTTGCC ACAGTTACTG 1561 TCAAGGGCGT GATGACCACA GGCAGTGACA TCGGGTTCAG TGTGATCCAG GCACATGATG 1621 TGCAGAACCC ACTCCATTTC GGTGAGATGA AGGTGTATGT GATCGAGCCC CACAGCATGG 1681 AGTTTGCCCC GTGCCAGGTG GAGGCACGTG TGGGCCAGGC CCTGGAGCTG CCCCTGAGGA 1741 TCAGTGGCCT CATGCCCGGC GGGGCCAGTG AGGTGGTCAC CTTGAGCGAC TGCTCCCACT 1801 TTGACTTGGC TGTCGAGGTG GAGAACCAGG GTGTGTTCCA GCCACTCCCA GGGAGGCTGC 1861 CGCCAGGCTC TGAGCACTGC AGCGGCATCC GGGTAAAGGC CGAGGCCCAG GGCTCTACCA 1921 CGCTTCTTGT GAGCTACAGA CACGGCCACG TCCACCTGAG TGCCAAGATC ACCATTGCTG 1981 CCTACCTGCC CCTCAAGGCT GTGGATCCCT CCTCTGTTGC CTTGGTAACC CTGGGCTCCT 2041 CAAAGGAGAT GCTGTTTGAA GGAGGTCCCA GACCTTGGAT CCTCGAGCCG TCCAAATTCT 2101 TCCAGAACGT CACCGCTGAG GACACTGACA GCATCGGCCT GGCTCTCTTT GCCCCCCATT 2161 CCTCCCGGAA TTATCAGCAA CACTGGATCC TTGTGACCTG TCAGGCCTTG GGTGAGCAGG 2221 TCATCGCCCT GTCGGTGGGG AACAAGCCCA GCCTCACCAA CCCCTTTCCT GCGGTGGAGC 2281 CTGCCGTGGT GAAGTTCGTC TGCGCCCCAC CGTCCAGGCT CACCCTCGCG CCTGTCTACA 2341 CCAGCCCCCA GCTGGACATG TCCTGTCCGC TGCTGCAGCA GAACAAGCAG GTGGTCCCAG 2401 TGTCCAGCCA CCGCAACCCC CGGCTGGACC TGGCTGCTTA CGACCAGGAG GGCCGCCGGT 2461 TCGACAACTT CAGCTCTCTG AGCATCCAGT GGGAGTCCAC CAGGCCAGTG TTGGCCAGCA 2521 TCGAGCCTGA GCTGCCCATG CAGCTGGTGT CCCAGGACGA TGAGAGTGGC CAAAAGAAGC 2581 TGCACGGTTT GCAGGCCATT TTGGTTCACG AGGCATCAGG AACCACAGCC ATCACTGCCA 2641 CTGCCACTGG CTACCAGGAG TCCCACCTCA GCTCTGCCAG AACAAAGCAG CCGCATGACC 2701 CTCTGGTGCC TCTGTCGGCC TCCATAGAGC TCATCCTGGT GGAGGACGTG AGGGTGAGCC 2761 CAGAAGAGGT GACCATCTAC AACCACCCTG GCATCCAGGC AGAGCTCCGC ATCAGGGAAG 2821 GCTCAGGTTA CTTCTTCCTC AACACCAGCA CCGCAGATGT TGTCAAGGTG GCCTACCAGG 2881 AGGCCAGGGG TGTCGCCATG GTAAGCTTGG GCCATCGGTC CCCACTGTTG GTTTTCATTC 2941 CTTATCTGGG CTGTTGTGTG GTTAATTGCC CAACTTTCTT GTACAAAGTT GGcattataa 3001 gaaagcattg cttatcaatt tgttgcaacg aac