Construct: ORF ccsbBroadEn_11712

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011736.1_s300c1, BRDN0000386436
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KLHL18 (23276)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23276 KLHL18 kelch like family member 18 XM_017006035.1 90.7% 90.7% 0_1ins141
2 human 23276 KLHL18 kelch like family member 18 XM_017006034.1 89.8% 89.8% 0_1ins141;559_573del
3 human 23276 KLHL18 kelch like family member 18 XM_017006033.1 89% 89% 0_1ins141;559_573del;799_813del
4 human 23276 KLHL18 kelch like family member 18 NM_025010.5 88.6% 88.6% 1_195del
5 human 23276 KLHL18 kelch like family member 18 XM_005265002.5 87.9% 87.9% 1_195del;895_909del
6 human 23276 KLHL18 kelch like family member 18 XM_005265003.3 87.9% 87.9% 1_195del;1120_1134del
7 human 23276 KLHL18 kelch like family member 18 XM_005265001.3 87.1% 87.1% 1_195del;895_909del;1135_1149del
8 mouse 270201 Klhl18 kelch-like 18 NM_177771.5 80.5% 87.1% (many diffs)
9 mouse 270201 Klhl18 kelch-like 18 XM_006512141.3 79.8% 86.3% (many diffs)
10 mouse 270201 Klhl18 kelch-like 18 XM_017313405.1 51.1% 55.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1593
ORF length:
1527
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TACAAATGAC ATGATGGAGT GCAAGCAGGA TGAGATTGTA ATGCAAGGAA
121TGGACCCAAG TGCCCTGGAG GCTCTGATCA ACTTTGCCTA CAACGGCAAC CTTGCCATTG
181ACCAGCAAAA TGTCCAGTCA TTGCTGATGG GGGCGAGCTT CCTGCAGCTG CAGAGCATCA
241AAGACGCCTG CTGCACATTC CTTCGAGAAC GGCTTCACCC AAAAAACTGC CTGGGTGTGC
301GCCAGTTTGC TGAGACAATG ATGTGTGCTG TGCTGTACGA CGCTGCCAAC AGCTTCATCC
361ACCAGCACTT TGTGGAGGTG TCCATGTCAG AAGAGTTCCT GGCCCTGCCC TTGGAAGACG
421TGCTTGAGCT GGTGTCTCGG GATGAGCTGA ATGTCAAATC TGAGGAGCAG GTCTTTGAAG
481CTGCATTGGC CTGGGTCAGA TACGACCGGG AGCAGAGGGG TCCCTACCTG CCTGAGCTGC
541TGTCCAATAT CCGCCTGCCC CTCTGTCGGC CCCAGTTCCT TTCAGACAGA GTACAGCAGG
601ATGACCTGGT GCGTTGCTGC CACAAATGCA GGGACCTGGT AGACGAAGCA AAGGACTACC
661ACCTCATGCC AGAGCGCCGG CCCCACCTGC CAGCTTTCAG AACCCGGCCA CGCTGCTGCA
721CATCCATCGC TGGACTTATC TACGCTGTAG GGGGCCTCAA CTCAGCAGGT GATTCCCTGA
781ATGTGGTGGA AGTGTTCGAC CCCATTGCCA ATTGCTGGGA GAGATGCCGT CCCATGACAA
841CAGCCCGCAG CCGCGTTGGC GTGGCTGTGG TGAACGGGCT TCTCTATGCC ATCGGAGGAT
901ATGACGGCCA GCTACGGCTG AGCACTGTGG AGGCCTACAA CCCGGAGACA GACACATGGA
961CCAGAGTGGG GAGCATGAAT AGCAAGAGAA GTGCCATGGG GACAGTCGTG CTGGATGGGC
1021AGATCTACGT CTGTGGGGGC TACGATGGCA ACTCTTCCCT CAGCTCCGTG GAGACCTACT
1081CACCTGAGAC GGACAAATGG ACAGTGGTGA CCTCGATGAG CTCGAATCGC AGTGCTGCTG
1141GGGTTACAGT CTTTGAGGGC AGGATATATG TGTCAGGCGG CCATGATGGT TTGCAGATCT
1201TCAGCAGTGT GGAACACTAC AACCACCACA CAGCCACCTG GCACCCTGCA GCTGGCATGC
1261TCAACAAGCG CTGCCGGCAC GGAGCCGCCT CCCTGGGGAG CAAGATGTTT GTCTGCGGGG
1321GCTACGATGG CTCTGGCTTC CTCAGCATTG CCGAGATGTA CAGCTCTGTG GCAGACCAGT
1381GGTGCCTGAT TGTCCCCATG CACACGCGCA GGAGCCGGGT CTCCCTGGTG GCCAGCTGTG
1441GGCGCCTCTA CGCTGTTGGG GGCTACGACG GACAGTCAAA CCTAAGCTCA GTGGAGATGT
1501ATGACCCAGA GACAGACTGC TGGACATTCA TGGCCCCCAT GGCGTGCCAT GAGGGAGGGG
1561TCGGTGTGGG CTGCATCCCT CTCCTCACCA TCTACCCAAC TTTCTTGTAC AAAGTtggca
1621ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)