Construct: ORF ccsbBroadEn_11715
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008334.1_s300c1, BRDN0000397928
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EHBP1 (23301)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354222.2 | 11.9% | 11.9% | (many diffs) |
| 2 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354221.2 | 11% | 11% | (many diffs) |
| 3 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_017003654.2 | 9.4% | 9.4% | (many diffs) |
| 4 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354219.2 | 9% | 9% | (many diffs) |
| 5 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354220.1 | 9% | 9% | (many diffs) |
| 6 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001142615.3 | 9% | 9% | (many diffs) |
| 7 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001142616.3 | 9% | 9% | (many diffs) |
| 8 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354218.1 | 9% | 9% | (many diffs) |
| 9 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_011532717.2 | 8.7% | 8.7% | (many diffs) |
| 10 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354217.1 | 8.7% | 8.7% | (many diffs) |
| 11 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_006711971.3 | 8.7% | 8.7% | (many diffs) |
| 12 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_017003650.2 | 8.7% | 8.7% | (many diffs) |
| 13 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001142614.2 | 8.7% | 8.7% | (many diffs) |
| 14 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_005264227.1 | 8.7% | 8.7% | (many diffs) |
| 15 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354215.1 | 8.5% | 8.5% | (many diffs) |
| 16 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354216.2 | 8.5% | 8.5% | (many diffs) |
| 17 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_011532716.3 | 8.5% | 8.5% | (many diffs) |
| 18 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354212.1 | 8.5% | 8.5% | (many diffs) |
| 19 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354213.1 | 8.5% | 8.5% | (many diffs) |
| 20 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354214.1 | 8.5% | 8.5% | (many diffs) |
| 21 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_015252.5 | 8.5% | 8.5% | (many diffs) |
| 22 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_005264226.3 | 8.5% | 8.5% | (many diffs) |
| 23 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_011532715.3 | 8.5% | 8.5% | (many diffs) |
| 24 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314440.1 | 8.5% | 9% | (many diffs) |
| 25 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314439.1 | 8.2% | 8.7% | (many diffs) |
| 26 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243693.2 | 8.2% | 8.7% | (many diffs) |
| 27 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | NM_153078.4 | 8.2% | 8.7% | (many diffs) |
| 28 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314438.1 | 8.1% | 8.6% | (many diffs) |
| 29 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243692.2 | 8.1% | 8.6% | (many diffs) |
| 30 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243691.2 | 8.1% | 8.6% | (many diffs) |
| 31 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243690.2 | 8.1% | 8.5% | (many diffs) |
| 32 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243689.2 | 8% | 8.5% | (many diffs) |
| 33 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | NM_001252515.1 | 8% | 8.5% | (many diffs) |
| 34 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243688.2 | 8% | 8.5% | (many diffs) |
| 35 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314437.1 | 8% | 8.5% | (many diffs) |
| 36 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243687.2 | 8% | 8.5% | (many diffs) |
| 37 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243686.2 | 8% | 8.5% | (many diffs) |
| 38 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243685.2 | 7.8% | 8.3% | (many diffs) |
| 39 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243681.2 | 7.8% | 8.3% | (many diffs) |
| 40 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243682.2 | 7.8% | 8.3% | (many diffs) |
| 41 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243683.2 | 7.8% | 8.3% | (many diffs) |
| 42 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243684.2 | 7.8% | 8.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TTCAGTTTGG AAGAGACTGC AGCGTGTGGG AAAACATGCA TCCAAGTTCC 121 AGTTTGTGGC CTCCTACCAG GAGCTCATGG TTGAGTGTAC GAAGAAATGG CAACCAGATA 181 AACTGGTGGT AGTTTGGACC AGAAGAAGCC GAAGGAAGTC TTCTAAGGCA CATAGCTGGC 241 AACCTGGAAT AAAAAATCCC TATCGTGGTG TTGTTGTGTG GCCTGTTCCT GAAAACATTG 301 AAATCACTGT AACACTTTTT AAGGATCCTC ATGCGGAAGA ATTTGAAGAC AAAGAGTGGA 361 CATTTGTTAT AGAAAATGTA AGCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac