Construct: ORF ccsbBroadEn_11721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016167.1_s300c1, BRDN0000395195
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR7 (23335)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23335 | WDR7 | WD repeat domain 7 | XM_017025683.1 | 80.5% | 74.8% | (many diffs) |
| 2 | human | 23335 | WDR7 | WD repeat domain 7 | NM_015285.2 | 53.2% | 54.6% | (many diffs) |
| 3 | human | 23335 | WDR7 | WD repeat domain 7 | XM_006722431.2 | 53.2% | 54.6% | (many diffs) |
| 4 | human | 23335 | WDR7 | WD repeat domain 7 | NM_052834.2 | 51% | 52.4% | (many diffs) |
| 5 | human | 23335 | WDR7 | WD repeat domain 7 | XM_017025682.1 | 51% | 52.4% | (many diffs) |
| 6 | human | 23335 | WDR7 | WD repeat domain 7 | XM_011525888.2 | 46.7% | 47.9% | (many diffs) |
| 7 | human | 23335 | WDR7 | WD repeat domain 7 | XR_001753170.2 | 32.4% | (many diffs) | |
| 8 | human | 23335 | WDR7 | WD repeat domain 7 | XR_001753171.2 | 31.6% | (many diffs) | |
| 9 | mouse | 104082 | Wdr7 | WD repeat domain 7 | NM_001014981.1 | 46.1% | 47.2% | (many diffs) |
| 10 | mouse | 104082 | Wdr7 | WD repeat domain 7 | XM_006525477.3 | 44.1% | 45.4% | (many diffs) |
| 11 | mouse | 104082 | Wdr7 | WD repeat domain 7 | XM_006525478.3 | 42.6% | 42.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2514
- ORF length:
- 2445
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGGAAAC AGCCTTGTTC TACCCATTGT TCTTTGGGGT CGAAAAGCGC 121 CCACACATTG CATCTCAGCG GTACTTTTAA CAGATGATGG GGCCACGATC GTAACAGGAT 181 GTCACGACGG ACAAATATGT CTCTGGGATC TTTCAGTAGA ACTGCAAATT AATCCTCGAG 241 CACTGTTGTT TGGTCATACA GCAGTTCTCT TCCAACAAGT GAAAGAAACG ATCAAAGAGA 301 ACATCAAGGA ACACCTCCTT GATGATGAAG AGGAGGATGA GGAGATAATG AGGCAGAGAA 361 GGGAAGAAAG TGATCCTGAA TATCGGTCCA GCAAATCAAA GCCATTGACC CTATTAGAAT 421 ATAATTTAAC TATGGACACT GCAAAGCTGT TTATGTCCTG CCTTCACGCC TGGGGTTTGA 481 ATGAAGTACT GGATGAAGTT TGCCTGGATC GCCTTGGAAT GCTGAAACCC CACTGCACCG 541 TATCGTTTGG CCTCTTGTCA AGAGGAGGCC ATATGTCACT GATGCTGCCG GGTTATAATC 601 AGCCTGCTTG TAAACTGTCA CATGGGAAAA CAGAAGTAGG AAGGAAGCTG CCAGCGTCTG 661 AGGGAGTAGG AAAGGGAACT TACGGAGTGT CCCGTGCCGT CACCACACAG CATCTCCTGT 721 CTATCATTTC TTTGGCAAAT ACTTTAATGA GTATGACCAA TGCAACTTTT ATTGGTGATC 781 ATATGAAGAA GGGTCCTACC AGGCCACCTA GACCAAGCAC CCCAGACCTT TCTAAGGCAA 841 GGGGTTCCCC TCCAACTTCC AGTAATATTG TGCAAGGACA GATTAAACAA GTTGCTGCAC 901 CTGTCGTTTC CGCTCGGTCT GATGCTGATC ACTCTGGCTC TGACCCTCCT TCTGCTCCTG 961 CTTTACATAC CTGTTTCTTA GTAAATGAAG GTTGGAGTCA GTTAGCTGCT ATGCACTGTG 1021 TTATGCTGCC AGACCTACTG GGATTGGATA AATTTAGGCC TCCCCTTCTG GAGATGCTGG 1081 CCCGAAGATG GCAAGATCGA TGCTTGGAGG TGAGAGAAGC CGCGCAGGCC CTGCTTCTGG 1141 CGGAACTGAG AAGAATTGAG CAGGCAGGCA GGAAGGAAGC CATTGATGCC TGGGCTCCTT 1201 ACTTACCTCA GTACATAGAC CACGTCATAT CACCTGGAGT CACATCAGAA GCCGCGCAGA 1261 CTATCACCAC GGCTCCTGAT GCCTCAGGGC CTGAAGCAAA AGTCCAGGAG GAAGAGCATG 1321 ACCTTGTTGA CGATGACATC ACCACTGGTT GCTTATCAAG TGTCCCACAA ATGAAAAAAA 1381 TTTCTACATC TTACGAGGAA AGACGGAAGC AAGCTACCGC TATTGTTTTA CTTGGAGTAA 1441 TAGGAGCTGA ATTTGGTGCT GAAATTGAAC CTCCTAAACT ATTGACCAGA CCTCGAAGCT 1501 CTAGCCAAAT TCCTGAGGGA TTCGGGTTGA CTAGTGGTGG ATCCAACTAC TCGCTGGCCA 1561 GACATACTTG CAAGGCACTG ACGTTTCTTC TGCTACAGCC TCCAAGCCCC AAACTTCCTC 1621 CACACAGCAC TATCCGAAGA ACAGCCATTG ATCTGATTGG ACGTGGGTTC ACTGTTTGGG 1681 AGCCTTACAT GGATGTGTCC GCTGTTCTGA TGGGGCTTCT CGAACTTTGT GCCGATGCCG 1741 AGAAACAACT TGCCAACATC ACAATGGGGT TGCCTCTGAG CCCAGCAGCT GACTCGGCCC 1801 GCTCTGCGAG GCATGCCCTC TCGCTCATTG CCACCGCCAG ACCACCCGCC TTCATCACCA 1861 CCATAGCCAA AGAGGTACAC AGACATACGG CTCTTGCAGC AAATACCCAA TCACAGCAGA 1921 ATATGCACAC AACAACTCTT GCACGAGCTA AAGGGGAAAT TTTGAGAGTC ATTGAAATTC 1981 TTATTGAAAA GATGCCCACA GATGTTGTGG ATCTTCTTGT GGAGGTTATG GACATCATTA 2041 TGTACTGCCT TGAAGGATCT TTAGTTAAAA AGAAAGGTCT TCAAGAATGT TTCCCAGCCA 2101 TCTGCAGGTT CTACATGGTC AGCTATTATG AGCGGAATCA CAGAATAGCA GTTGGAGCTC 2161 GCCATGGTTC AGTGGCCCTG TACGACATCC GGACTGGAAA ATGTCAGACA ATCCATGGAC 2221 ACAAGGGACC AATCACTGCA GTGGCTTTTG CTCCTGATGG AAGATATCTT GCCACCTACT 2281 CAAACACTGA CAGCCACATT TCTTTTTGGC AGATGAACAC GTCACTGCTG GGAAGCATCG 2341 GCATGCTGAA CTCGGCACCT CAGCTGCGCT GCATTAAAAC CTACCAGGTG CCCCCTGTGC 2401 AGCCCGCGTC CCCCGGCTCC CACAATGCCC TCAAGCTTGC CCGGCTCATC TGGACTTCCA 2461 ACCGCAACGT CATCCTCATG GCCCATGACG GGAAGGAGCA CCGCTTCATG GTCTTGCCAA 2521 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac