Construct: ORF ccsbBroadEn_11732
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006280.1_s300c1, BRDN0000397721
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAU2 (23383)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | XM_011527844.2 | 51.7% | 51.7% | 1_606del;730_732delGTA |
| 2 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | XM_005259837.3 | 35.6% | 35.6% | 1_1182del |
| 3 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | NM_015329.4 | 35.5% | 35.5% | 1_1182del;1306_1308delGTA |
| 4 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | XM_017026539.2 | 34.9% | 34.9% | 1_1215del |
| 5 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | XM_005259838.4 | 34.9% | 34.9% | 1_1215del;1339_1341delGTA |
| 6 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | XM_006722711.3 | 15.5% | 8.7% | 1_1182del;1304_1310delAGGTAGT;1476_1477ins367 |
| 7 | human | 23383 | MAU2 | MAU2 sister chromatid cohes... | XR_430132.2 | 13.4% | 1_1213del;1335_1341delAGGTAGT;1875_4849del | |
| 8 | mouse | 74549 | Mau2 | MAU2 sister chromatid cohes... | NM_028993.4 | 32.1% | 35.2% | (many diffs) |
| 9 | mouse | 74549 | Mau2 | MAU2 sister chromatid cohes... | XM_006509776.3 | 32% | 35.2% | (many diffs) |
| 10 | mouse | 74549 | Mau2 | MAU2 sister chromatid cohes... | NM_001167939.1 | 30% | 30% | (many diffs) |
| 11 | mouse | 74549 | Mau2 | MAU2 sister chromatid cohes... | XR_870466.2 | 20.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 720
- ORF length:
- 654
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CAACGCGGAA GCCCAGTTCA CCACGGCCCT GCGGCTCACC AACCACCAGG 121 AGCTGTGGGC CTTCATCGTC ACCAACCTGG CGAGTGTGTA TATACGGGAA GGAAATAGAC 181 ACCAAGAGCT CTACAGTCTG CTGGAGAGGA TCAACCCGGA CCACAGCTTC CCTGTCAGCT 241 CGCACTGCCT CCGAGCAGCC GCCTTCTATG TGCGTGGGCT CTTCTCCTTC TTCCAGGGAC 301 GCTACAACGA GGCCAAGCGA TTTCTGCGGG AAACTCTGAA GATGTCCAAT GCTGAGGACC 361 TGAACCGGCT CACAGCCTGC TCCCTCGTGC TTCTGGGCCA CATCTTCTAT GTGCTGGGAA 421 ACCACAGGGA GAGTAACAAC ATGGTGGTGC CTGCCATGCA GCTCGCCAGC AAGATCCCGG 481 ACATGTCGGT ACAGCTGTGG TCGTCAGCAC TGCTGAGAGA CCTGAATAAA GCCTGTGGGA 541 ACGCCATGGA TGCCCATGAA GCCGCCCAGA TGCACCAGAA CTTCTCGCAG CAGCTGCTCC 601 AGGACCACAT TGAGGCCTGC AGCCTCCCCG AACACAACCT CATCACGTGG ACAGACGGTC 661 CACCCCCCGT GCAGTTCCAA GCTCAGAATG GACCCAACAC CAGCCTGGCC AGCCTCCTGT 721 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 781 acgaac