Construct: ORF ccsbBroadEn_11788
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012449.1_s300c1, BRDN0000397334
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SIN3A (25942)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25942 | SIN3A | SIN3 transcription regulato... | NM_001145357.2 | 11.7% | 10% | (many diffs) |
| 2 | human | 25942 | SIN3A | SIN3 transcription regulato... | NM_001145358.2 | 11.7% | 10% | (many diffs) |
| 3 | human | 25942 | SIN3A | SIN3 transcription regulato... | NM_015477.3 | 11.7% | 10% | (many diffs) |
| 4 | human | 25942 | SIN3A | SIN3 transcription regulato... | XM_006720465.3 | 11.7% | 10% | (many diffs) |
| 5 | human | 25942 | SIN3A | SIN3 transcription regulato... | XM_006720466.3 | 11.7% | 10% | (many diffs) |
| 6 | human | 25942 | SIN3A | SIN3 transcription regulato... | XM_006720467.3 | 11.7% | 10% | (many diffs) |
| 7 | human | 25942 | SIN3A | SIN3 transcription regulato... | XM_024449896.1 | 11.7% | 10% | (many diffs) |
| 8 | mouse | 20466 | Sin3a | transcriptional regulator, ... | NM_001110351.1 | 10.7% | 9.7% | (many diffs) |
| 9 | mouse | 20466 | Sin3a | transcriptional regulator, ... | NM_011378.2 | 10.7% | 9.7% | (many diffs) |
| 10 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_017313231.1 | 10.7% | 9.7% | (many diffs) |
| 11 | mouse | 20466 | Sin3a | transcriptional regulator, ... | NM_001110350.1 | 10.7% | 9.7% | (many diffs) |
| 12 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_006510890.3 | 10.7% | 9.7% | (many diffs) |
| 13 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_006510891.3 | 10.7% | 9.7% | (many diffs) |
| 14 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_006510892.3 | 10.7% | 9.7% | (many diffs) |
| 15 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_006510893.3 | 10.7% | 9.7% | (many diffs) |
| 16 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_011242683.2 | 10.7% | 9.7% | (many diffs) |
| 17 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_011242684.2 | 10.7% | 9.7% | (many diffs) |
| 18 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_011242685.2 | 10.7% | 9.7% | (many diffs) |
| 19 | mouse | 20466 | Sin3a | transcriptional regulator, ... | XM_011242686.2 | 10.7% | 9.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 534
- ORF length:
- 468
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GCGGCGTTTG GATGACCAGG AGTCACCGGT GTATGCAGCC CAGCAGCGTC 121 GGATCCCTGG CAGCACAGAG GCTTTTCCTC ACCAGCACCG GGTGCTTGCC CCTGCCCCTC 181 CTGTGTATGA AGCAGTGTCT GAGACCATGC AGTCAGCTAC GGGAATTCAG TACTCTGTAA 241 CACCCAGCTA CCAGGTTTCA GCCATGCCAC AGAGCTCCGG CAGTCATGGG CCCGCTATAG 301 CAGCAGTTCA TAGCAGCCAT CATCACCCAA CAGCGGTGCA GCCCCACGGA GGCCAGGTGG 361 TCCAGAGTCA TGCTCATCCA GCCCCACCAG TTGCACCAGT GCAGGGACAG CAGCAATTTC 421 AGAGGCTGAA GGTGGTATTC AGCTCTTTTT CTTGGGTCAA AAAATTTATC TTTAGCAGGA 481 AATACTGGTT GCAGCTTGTT GGTTGTGGTG GTACAACTTC TAACCTGAGA TACTACCCAA 541 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac