Construct: ORF ccsbBroadEn_11789

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007576.1_s300c1, BRDN0000397828
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NECTIN3 (25945)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25945 NECTIN3 nectin cell adhesion molecu... NM_001243286.2 99.9% 99.7% 752C>A
2 human 25945 NECTIN3 nectin cell adhesion molecu... XM_017006126.1 70.7% 69.8% (many diffs)
3 human 25945 NECTIN3 nectin cell adhesion molecu... XM_017006123.1 66.7% 65.6% (many diffs)
4 human 25945 NECTIN3 nectin cell adhesion molecu... NM_015480.3 66.6% 64.8% 752C>A;1065_1090del;1125_1647del
5 human 25945 NECTIN3 nectin cell adhesion molecu... NM_001243288.2 64% 60.2% (many diffs)
6 human 25945 NECTIN3 nectin cell adhesion molecu... XM_011512663.1 63% 61.2% (many diffs)
7 human 25945 NECTIN3 nectin cell adhesion molecu... XM_017006125.1 60.3% 56% (many diffs)
8 human 25945 NECTIN3 nectin cell adhesion molecu... XM_017006124.1 59.1% 56.1% (many diffs)
9 human 25945 NECTIN3 nectin cell adhesion molecu... XR_924122.2 46.3% (many diffs)
10 human 25945 NECTIN3 nectin cell adhesion molecu... XR_002959508.1 36.6% (many diffs)
11 human 25945 NECTIN3 nectin cell adhesion molecu... XM_017006127.2 27.9% 26.2% (many diffs)
12 mouse 58998 Nectin3 nectin cell adhesion molecu... XM_006522434.3 80.2% 82.1% (many diffs)
13 mouse 58998 Nectin3 nectin cell adhesion molecu... NM_021497.2 74.9% 76.7% (many diffs)
14 mouse 58998 Nectin3 nectin cell adhesion molecu... NM_021496.3 64.4% 65.8% (many diffs)
15 mouse 58998 Nectin3 nectin cell adhesion molecu... NM_021495.4 60.8% 61% (many diffs)
16 mouse 58998 Nectin3 nectin cell adhesion molecu... XR_384583.3 29.1% (many diffs)
17 mouse 58998 Nectin3 nectin cell adhesion molecu... XR_001781846.1 9.8% (many diffs)
18 mouse 58998 Nectin3 nectin cell adhesion molecu... XR_001781848.1 9.7% (many diffs)
19 mouse 58998 Nectin3 nectin cell adhesion molecu... XR_001781847.1 9.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1164
ORF length:
1098
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GCGGACCCTG CGGCCGTCCC CGCTGTGTCC TGGAGGCGGC AAAGCACAAC
121TTTCCTCCGC TTCTCTCCTC GGAGCCGGGC TCCTGCTGCA GCCCCCGACG CCACCTCCGC
181TGCTGCTGCT GCTCTTCCCG CTGCTGCTCT TCTCCAGGCT CTGTGGTGCC TTAGCTGGAC
241CAATTATTGT GGAGCCACAT GTCACAGCAG TATGGGGAAA GAATGTTTCA TTAAAGTGTT
301TAATTGAAGT AAATGAAACC ATAACACAGA TTTCATGGGA GAAGATACAT GGCAAAAGTT
361CACAGACTGT TGCAGTTCAC CATCCCCAAT ATGGATTCTC TGTTCAAGGA GAATATCAGG
421GAAGAGTCTT GTTTAAAAAT TACTCACTTA ATGATGCAAC AATTACTCTG CATAACATAG
481GATTCTCTGA TTCTGGAAAA TACATCTGCA AAGCTGTTAC ATTCCCGCTT GGAAATGCCC
541AGTCCTCTAC AACTGTAACT GTGTTAGTTG AACCCACTGT GAGCCTGATA AAAGGGCCAG
601ATTCTTTAAT TGATGGAGGA AATGAAACAG TAGCAGCCAT TTGCATCGCA GCCACTGGAA
661AACCCGTTGC ACATATTGAC TGGGAAGGTG ATCTTGGTGA AATGGAATCC ACTACAACTT
721CTTTTCCAAA TGAAACGGCA ACGATTATCA GCCAGTACAA GCTATTTCCA ACCAGATTTG
781CTAGAGGAAG GCGAATTACT TGTGTTGTAA AACATCAAGC CTTGGAAAAG GACATCCGAT
841ACTCTTTCAT ATTAGACATA CAGTATGCTC CTGAAGTTTC GGTAACAGGA TATGATGGAA
901ATTGGTTTGT AGGAAGAAAA GGTGTTAATC TCAAATGTAA TGCTGATGCA AATCCACCAC
961CCTTCAAATC TGTGTGGAGC AGGTTGGATG GACAATGGCC TGATGGTTTA TTGGCTTCAG
1021ACAATACTCT TCATTTTGTC CATCCATTGA CTTTCAATTA TTCTGGTGTT TATATCTGTA
1081AAGTGACCAA TTCCCTTGGT CAAAGAAGTG ACCAAAAAGT CATCTACATT TCAGCCTACA
1141ATTCAGTGGC ATCCCTCAAC TGCTGCTCAA CTTTCTTGTA CAAAGTtggc attataagaa
1201agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)