Construct: ORF ccsbBroadEn_11820
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003849.1_s300c1, BRDN0000390038
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPN22 (26191)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | XM_017001006.1 | 54.8% | 50.9% | (many diffs) |
| 2 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | XM_011541223.2 | 23.9% | 22.2% | (many diffs) |
| 3 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | XM_011541225.2 | 22.8% | 21.2% | (many diffs) |
| 4 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | NM_012411.5 | 22.7% | 21.1% | (many diffs) |
| 5 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | XM_017001004.1 | 22.1% | 20.5% | (many diffs) |
| 6 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | XM_011541222.1 | 22.1% | 20.5% | (many diffs) |
| 7 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | NM_001193431.2 | 21.9% | 20.3% | (many diffs) |
| 8 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | XM_011541221.1 | 21.9% | 20.3% | (many diffs) |
| 9 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | NM_001308297.1 | 21.8% | 20.2% | (many diffs) |
| 10 | human | 26191 | PTPN22 | protein tyrosine phosphatas... | NM_015967.7 | 21.1% | 19.6% | (many diffs) |
| 11 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | NM_008979.2 | 18.6% | 17% | (many diffs) |
| 12 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | XM_006501148.3 | 18.6% | 17% | (many diffs) |
| 13 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | XM_006501149.3 | 18.6% | 17% | (many diffs) |
| 14 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | XM_006501150.2 | 18.6% | 17% | (many diffs) |
| 15 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | XM_011240041.2 | 18.6% | 17% | (many diffs) |
| 16 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | XM_011240042.2 | 18.6% | 17% | (many diffs) |
| 17 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | NR_104070.1 | 16.2% | (many diffs) | |
| 18 | mouse | 19260 | Ptpn22 | protein tyrosine phosphatas... | XR_375500.3 | 7.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 603
- ORF length:
- 537
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCAAAGAGAA ATTCTGCAGA AGTTCCTGGA TGAGGCCCAA AGCAAGAAAA 121 TTACTAAAGA GGAGTTTGCC AATGAATTTC TGAAGCTGAA AAGGCAATCT ACCAAGTACA 181 AGGCAGACAA AACCTATCCT ACAACTGTGG CTGAGAAGCC CAAGAATATC AAGAAAAACA 241 GATATAAGGA TATTTTGCCC TATGATTATA GCCGGGTAGA ACTATCCCTG ATAACCTCTG 301 ATGAGGATTC CAGCTACATC AATGCCAACT TCATTAAGGG AGTTTATGGA CCCAAGGCTT 361 ATATTGCCAC CCAGGGTCCT TTATCTACAA CCCTCCTGGA CTTCTGGAGG ATGATTTGGG 421 AATATAGTGT CCTTATCATT GTTATGGCAT GCATGGAGTA TGAAATGGGA AAGGAAGCTG 481 AAAAAAGGAA ATCTGATTAT ATAATCAGGA CTCTAAAAGT TAAGTTCAAT AGTGTATCTG 541 TAATTCTTGC CCACCAAACA AGCCTGCAGA ATCTGTTCAG TCAAATAACT CCAGCTCATT 601 TCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 661 gcaacgaac