Construct: ORF ccsbBroadEn_11894
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003900.1_s300c1, BRDN0000395527
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H7A (29066)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | XM_024450243.1 | 28.7% | 28.7% | 1_1239del |
| 2 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | XM_011522464.2 | 22.8% | 22.8% | 1_1695del |
| 3 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | XM_017023174.1 | 19.1% | 19.1% | 1_2109del |
| 4 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | NM_014153.4 | 17.1% | 17.1% | 1_2412del |
| 5 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | XM_006720877.2 | 17.1% | 17.1% | 1_2412del |
| 6 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | XM_011522463.2 | 17.1% | 17.1% | 1_2412del |
| 7 | human | 29066 | ZC3H7A | zinc finger CCCH-type conta... | XR_932825.1 | 13.5% | 1_2475del;2977_3705del | |
| 8 | mouse | 106205 | Zc3h7a | zinc finger CCCH type conta... | XM_017316843.1 | 25.4% | 24.6% | (many diffs) |
| 9 | mouse | 106205 | Zc3h7a | zinc finger CCCH type conta... | NM_145931.2 | 15.1% | 14.7% | (many diffs) |
| 10 | mouse | 106205 | Zc3h7a | zinc finger CCCH type conta... | XM_006521664.2 | 15.1% | 14.7% | (many diffs) |
| 11 | mouse | 106205 | Zc3h7a | zinc finger CCCH type conta... | XM_006521665.2 | 15.1% | 14.7% | (many diffs) |
| 12 | mouse | 106205 | Zc3h7a | zinc finger CCCH type conta... | XM_006521666.1 | 15.1% | 14.7% | (many diffs) |
| 13 | mouse | 106205 | Zc3h7a | zinc finger CCCH type conta... | NR_027502.1 | 11.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 567
- ORF length:
- 501
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGAGAATGGG ATACAAGATA TGGAGCAATT TTACGAACTA TGGCTCAAGA 121 GTCAAAAAAA TGAAAAAAGT GAAGACATAG CCAGTCAGTC AAACAAGGAA AATGGAAAAC 181 AAATTCACAT GCCAACAGAT TATGCTGAAG TTACAGTGGA CTTTCACTGC TGGATGTGTG 241 GGAAAAACTG CAACAGTGAG AAGCAGTGGC AGGGCCACAT CTCCTCCGAG AAGCACAAAG 301 AGAAGGTTTT CCACACCGAG GACGACCAGT ACTGCTGGCA GCACCGCTTC CCAACAGGCT 361 ATTTCAGTAT TTGTGATAGG TATATGAATG GCACCTGCCC AGAAGGAAAC AGCTGTAAAT 421 TTGCACATGG AAATGCCGAA CTTCATGAAT GGGAAGAAAG AAGAGATGCC CTAAAGATGA 481 AGCTCAACAA AGCACGAAAA GATCACTTAA TTGGCCCAAA TGATAATGAC TTTGGAAAAT 541 ATAGTTTTTT GTTTAAAGAT TTAAACTACC CAACTTTCTT GTACAAAGTt ggcattataa 601 gaaagcattg cttatcaatt tgttgcaacg aac