Transcript: Human XM_017023174.1

PREDICTED: Homo sapiens zinc finger CCCH-type containing 7A (ZC3H7A), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZC3H7A (29066)
Length:
3831
CDS:
490..3102

Additional Resources:

NCBI RefSeq record:
XM_017023174.1
NBCI Gene record:
ZC3H7A (29066)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017023174.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000161104 GCGATGAGAGTGATGTCTATT pLKO.1 2419 CDS 100% 13.200 18.480 N ZC3H7A n/a
2 TRCN0000322504 ATCTGTATGTAGGTTGCTAAA pLKO_005 3535 3UTR 100% 10.800 15.120 N Zc3h7a n/a
3 TRCN0000165008 GCGCAGGTACTTGGTAATCAA pLKO.1 2260 CDS 100% 5.625 7.875 N ZC3H7A n/a
4 TRCN0000160777 CCGGTTACAAAGCATGAGTTT pLKO.1 1975 CDS 100% 4.950 6.930 N ZC3H7A n/a
5 TRCN0000158501 CATATAAGAATCGTGACGGTA pLKO.1 3413 3UTR 100% 2.640 3.696 N ZC3H7A n/a
6 TRCN0000191887 GCTCAGAAATTGGGATTTAAA pLKO.1 685 CDS 100% 15.000 10.500 N Zc3h7a n/a
7 TRCN0000216154 CACCGCTTAACAACAGTAATT pLKO.1 1325 CDS 100% 13.200 9.240 N Zc3h7a n/a
8 TRCN0000158614 CAGTTACCAAACCATCTTCAT pLKO.1 1451 CDS 100% 4.950 3.465 N ZC3H7A n/a
9 TRCN0000165080 GCACATGGAAATGCCGAACTT pLKO.1 2956 CDS 100% 4.950 3.465 N ZC3H7A n/a
10 TRCN0000166807 CAGATGGTGAAGTGACTGCTA pLKO.1 3300 3UTR 100% 2.640 1.848 N ZC3H7A n/a
11 TRCN0000160466 CCTGCTATTCTAATATGGGTT pLKO.1 476 5UTR 100% 2.640 1.848 N ZC3H7A n/a
12 TRCN0000165390 CACAGGAGCAATATGCGGTAT pLKO.1 261 5UTR 100% 4.050 5.670 N ZC3H7A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017023174.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11894 pDONR223 100% 19.1% 19.1% None 1_2109del n/a
2 ccsbBroad304_11894 pLX_304 0% 19.1% 19.1% V5 1_2109del n/a
3 TRCN0000467084 ACCGATTTAAGGTTGATTACTGGG pLX_317 66.4% 19.1% 19.1% V5 1_2109del n/a
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