Construct: ORF ccsbBroadEn_11913

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004419.1_s300c1, BRDN0000392156
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX12 (29934)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29934 SNX12 sorting nexin 12 NM_001256185.1 93.6% 92.4% 478_478delGinsAGTCTTGCTGTGTCT;482delG;486_487insGCTGGAGTGCAGTGGCA
2 human 29934 SNX12 sorting nexin 12 NM_013346.4 93.6% 92.4% 478_478delGinsAGTCTTGCTGTGTCT;482delG;486_487insGCTGGAGTGCAGTGGCA
3 human 29934 SNX12 sorting nexin 12 NM_001256188.1 91.2% 90.1% (many diffs)
4 human 29934 SNX12 sorting nexin 12 NM_001256187.1 55.8% 51.1% 261_262ins125;288_289ins103
5 human 29934 SNX12 sorting nexin 12 NM_001256186.1 53.4% 48.8% 152_153insGGTTCGCATGCG;249_250ins125;276_277ins103
6 mouse 55988 Snx12 sorting nexin 12 NM_001110311.1 90.9% 93% (many diffs)
7 mouse 55988 Snx12 sorting nexin 12 NM_018875.2 89.4% 93% (many diffs)
8 mouse 55988 Snx12 sorting nexin 12 NM_001110310.1 88.2% 92.4% (many diffs)
9 mouse 55988 Snx12 sorting nexin 12 XM_011247645.2 72% 73.8% (many diffs)
10 mouse 55988 Snx12 sorting nexin 12 XM_011247646.2 69.9% 73.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
582
ORF length:
516
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGACACGGCA GTAGCTGATA CCCGGCGCCT TAACTCGAAG CCGCAGGACC
121TGACCGACGC TTACGGGCCG CCAAGTAACT TCCTGGAGAT CGACATCTTT AATCCTCAGA
181CGGTGGGCGT GGGACGCGCG CGCTTCACCA CCTATGAGGT TCGCATGCGG ACAAACCTAC
241CTATCTTCAA GCTAAAGGAG TCCTGCGTAC GGCGGCGCTA CAGTGACTTT GAGTGGCTGA
301AAAATGAGCT GGAGAGAGAT AGCAAGATTG TAGTACCACC ACTGCCTGGG AAAGCCTTGA
361AGCGGCAGCT CCCTTTCCGA GGAGATGAAG GGATCTTTGA GGAGTCTTTC ATCGAAGAAA
421GGAGGCAGGG CCTCGAGCAG TTTATTAACA AAATTGCTGG GCACCCACTG GCTCAGAATG
481AACGCTGCCT ACACATGTTC CTGCAAGAGG AGGCAATTGA CAGGAACTAC GTCCCGGGGA
541AGAGTCTTGC TGTGTCTTGC CCAGGCTGGA GTGCAGTGGC ATGCCCAACT TTCTTGTACA
601AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)