Construct: ORF ccsbBroadEn_11993
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004510.1_s300c1, BRDN0000389675
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RTF2 (51507)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51507 | RTF2 | replication termination fac... | NM_001283037.1 | 15.4% | 12.1% | (many diffs) |
| 2 | human | 51507 | RTF2 | replication termination fac... | NM_001283036.1 | 11.7% | 9.1% | (many diffs) |
| 3 | human | 51507 | RTF2 | replication termination fac... | NM_016407.4 | 11.6% | 9.1% | (many diffs) |
| 4 | human | 51507 | RTF2 | replication termination fac... | NM_001283035.1 | 10.2% | 8.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 192
- ORF length:
- 126
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TATAAAAAAG 61 TTGGCATGGG TTGCGACGGG GGAACAATCC CCAAGAGGCA TGAACTGGTG AAGGGGCCGA 121 AGAAGGTTGA GAAGGCAATT ATTGGTGGGC TCCTGGATGG GGCCTGGTCA CCAGAAACAC 181 CAAGCCAAGA TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 241 caatttgttg caacgaac