Construct: ORF ccsbBroadEn_12006
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017665.1_s300c1, BRDN0000391896
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC2L (51693)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318525.2 | 100% | 100% | |
| 2 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_016209.5 | 99.2% | 99.2% | 372_374delCAG |
| 3 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318524.2 | 95.2% | 95.2% | 372_392del |
| 4 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318530.2 | 78.4% | 78.4% | 0_1ins90 |
| 5 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318528.2 | 77.8% | 77.8% | 0_1ins90;282_284delCAG |
| 6 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318532.2 | 68.5% | 48.3% | (many diffs) |
| 7 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318529.2 | 68% | 48% | (many diffs) |
| 8 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318527.2 | 65.3% | 46.2% | (many diffs) |
| 9 | human | 51693 | TRAPPC2L | trafficking protein particl... | NM_001318526.2 | 59.2% | 51.9% | 0_1ins118;89_176del |
| 10 | human | 51693 | TRAPPC2L | trafficking protein particl... | XM_017023270.1 | 59.2% | 51.9% | 0_1ins118;89_176del |
| 11 | human | 51693 | TRAPPC2L | trafficking protein particl... | NR_134670.2 | 17.7% | (many diffs) | |
| 12 | human | 51693 | TRAPPC2L | trafficking protein particl... | NR_134671.1 | 16.8% | (many diffs) | |
| 13 | mouse | 59005 | Trappc2l | trafficking protein particl... | NM_021502.2 | 89.4% | 98.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 483
- ORF length:
- 417
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGTGTGCATC GCGGTGATTG CCAAGGAGAA TTACCCCCTC TACATTCGCA 121 GCACCCCTAC GGAGAACGAG CTGAAGTTCC ACTACATGGT GCACACATCT CTGGACGTGG 181 TGGATGAGAA GATCTCCGCA ATGGGGAAGG CCCTGGTCGA CCAGAGGGAG CTGTACCTGG 241 GCCTGCTCTA CCCCACGGAG GACTACAAGG TATACGGCTA CGTCACCAAC TCCAAGGTGA 301 AGTTTGTCAT GGTGGTAGAT TCCTCCAACA CAGCCCTTCG AGACAACGAA ATTCGCAGCA 361 TGTTCCGGAA GCTACACAAC TCCTACACAG ACGTGATGTG CAACCCCTTC TACAACCCGG 421 GGGACCGCAT CCAGTCCAGG GCCTTTGATA ACATGGTGAC GTCGATGATG ATACAGGTGT 481 GCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 541 gcaacgaac