Construct: ORF ccsbBroadEn_12013

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004564.1_s300c1, BRDN0000392892
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UIMC1 (51720)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51720 UIMC1 ubiquitin interaction motif... NM_001317961.1 99.8% 100% 228C>T;846C>A
2 human 51720 UIMC1 ubiquitin interaction motif... XM_017009575.1 89% 89.1% 228C>T;700_900del;1047C>A
3 human 51720 UIMC1 ubiquitin interaction motif... XM_005265932.3 79% 79.2% 228C>T;357_358ins345;501C>A
4 human 51720 UIMC1 ubiquitin interaction motif... XM_005265933.2 79% 79.2% 228C>T;357_358ins345;501C>A
5 human 51720 UIMC1 ubiquitin interaction motif... XM_017009576.1 79% 79.2% 228C>T;357_358ins345;501C>A
6 human 51720 UIMC1 ubiquitin interaction motif... XM_017009577.1 79% 79.2% 228C>T;357_358ins345;501C>A
7 human 51720 UIMC1 ubiquitin interaction motif... NM_001199297.2 76.8% 76.9% 228C>T;700_1197del;1344C>A
8 human 51720 UIMC1 ubiquitin interaction motif... NM_001199298.2 76.8% 76.9% 228C>T;700_1197del;1344C>A
9 human 51720 UIMC1 ubiquitin interaction motif... NM_016290.4 76.8% 76.9% 228C>T;700_1197del;1344C>A
10 human 51720 UIMC1 ubiquitin interaction motif... XM_005265930.2 76.8% 76.9% 228C>T;700_1197del;1344C>A
11 human 51720 UIMC1 ubiquitin interaction motif... XM_006714871.2 76.8% 76.9% 228C>T;700_1197del;1344C>A
12 human 51720 UIMC1 ubiquitin interaction motif... XM_005265934.2 68.9% 58.2% (many diffs)
13 human 51720 UIMC1 ubiquitin interaction motif... XM_005265935.2 68.9% 58.2% (many diffs)
14 human 51720 UIMC1 ubiquitin interaction motif... XM_006714874.2 68.9% 58.2% (many diffs)
15 human 51720 UIMC1 ubiquitin interaction motif... XM_017009574.2 66% 66% 0_1ins234;466_963del;1110C>A
16 human 51720 UIMC1 ubiquitin interaction motif... NR_146150.1 63.1% (many diffs)
17 human 51720 UIMC1 ubiquitin interaction motif... XM_005265936.2 63% 58.3% 0_1ins373;88_89ins239;234C>A
18 human 51720 UIMC1 ubiquitin interaction motif... XM_017009578.1 63% 58.3% 0_1ins373;88_89ins239;234C>A
19 human 51720 UIMC1 ubiquitin interaction motif... XM_017009579.1 63% 58.3% 0_1ins373;88_89ins239;234C>A
20 human 51720 UIMC1 ubiquitin interaction motif... NR_146149.1 61.4% (many diffs)
21 human 51720 UIMC1 ubiquitin interaction motif... XM_011534570.1 51.1% 51% (many diffs)
22 human 51720 UIMC1 ubiquitin interaction motif... XM_011534568.2 50.6% 49.7% (many diffs)
23 mouse 20184 Uimc1 ubiquitin interaction motif... XM_006517167.2 73.3% 65.1% (many diffs)
24 mouse 20184 Uimc1 ubiquitin interaction motif... NM_011307.2 63.5% 56.3% (many diffs)
25 mouse 20184 Uimc1 ubiquitin interaction motif... XM_006517166.2 63.5% 56.3% (many diffs)
26 mouse 20184 Uimc1 ubiquitin interaction motif... XM_011244499.1 52.8% 47.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1725
ORF length:
1659
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC ACGGAGAAAG AAAAAAGTTA AAGAAGTCTC CGAATCTCGG AACCTGGAGA
121AGAAGGATGT GGAAACTACC AGTTCTGTCA GTGTGAAGAG GAAGCGTAGA CTTGAGGATG
181CATTCATTGT GATATCCGAT AGTGATGGAG AGGAACCAAA GGAGGAAAAT GGGTTGCAGA
241AAACGAAGAC AAAACAGTCG AATAGAGCAA AGTGTTTGGC CAAAAGAAAA ATTGCACAGA
301TGACAGAAGA AGAACAGTTT GCTCTGGCTC TCAAAATGAG TGAGCAGGAA GCTAGGGAGG
361TGAACAGCCA GGAGGAGGAA GAAGAGGAGC TCTTGAGGAA AGCCATTGCT GAAAGCCTGA
421ATAGTTGCCG GCCTTCTGAT GCTTCCGCTA CCAGATCTCG ACCTCTGGCC ACTGGACCGT
481CTTCCCAGTC CCATCAAGAG AAAACCACAG ACTCTGGGCT CACTGAAGGC ATATGGCAGC
541TGGTACCTCC ATCACTGTTT AAAGGCTCAC ATATCAGTCA GGGAAACGAG GCTGAGGAAA
601GAGAGGAGCC TTGGGACCAC ACTGAAAAAA CTGAAGAGGA GCCGGTCTCT GGCAGCTCAG
661GAAGCTGGGA CCAGTCAAGC CAGCCAGTGT TTGAGAATGT GAACGTTAAA TCTTTTGACA
721GATGTACTGG CCACTCGGCT GAGCACACAC AGTGTGGGAA GCCACAGTCT TCCCAAGGGA
781TTGTTGAAGA AACTTCTGAA GAGGGAAACT CTGTACCTGC TTCACAAAGT GTTGCTGCTT
841TGACCAGTAA GAGAAGCTTA GTCCTTATGC CAGAGAGTTC TGCAGAAGAA ATCACTGTTT
901GTCCTGAGAC ACAGCTAAGT TCCTCTGAAA CTTTTGACCT TGAAAGAGAA GTCTCTCCAG
961GTAGCAGAGA TATCTTGGAT GGAGTCAGAA TAATAATGGC AGATAAGGAG GTTGGTAACA
1021AGGAAGATGC TGAGAAGGAA GTAGCTATTT CTACCTTCTC ATCCAGTAAC CAGGTATCCT
1081GCCCGCTATG TGACCAATGC TTTCCACCCA CAAAGATTGA ACGACATGCC ATGTACTGCA
1141ATGGTCTGAT GGAGGAAGAT ACAGTATTGA CTCGGAGACA AAAAGAGGCC AAGACCAAGA
1201GTGACAGTGG GACAGCTGCC CAGACTTCTC TAGACATTGA CAAGAATGAG AAGTGTTACC
1261TCTGTAAATC CCTGGTCCCA TTTAGAGAGT ATCAGTGTCA TGTGGACTCC TGTCTCCAGC
1321TTGCAAAGGC TGACCAAGGA GATGGACCTG AAGGGAGTGG AAGAGCATGT TCAACTGTGG
1381AGGGGAAGTG GCAGCAGAGG CTGAAGAACC CAAAGGAAAA AGGCCACAGT GAAGGCCGAC
1441TCCTTAGTTT CTTGGAACAG TCTGAGCACA AGACTTCAGA TGCAGACATC AAGTCTTCAG
1501AAACAGGAGC CTTCAGGGTG CCTTCACCAG GGATGGAAGA GGCAGGCTGC AGCAGAGAGA
1561TGCAGAGTTC TTTCACACGT CGTGACTTAA ATGAATCTCC CGTCAAGTCT TTTGTTTCCA
1621TTTCAGAAGC CACAGATTGC TTAGTGGACT TTAAAAAGCA AGTTACTGTC CAGCCAGGTA
1681GTCGGACACG GACCAAAGCT GGCAGAGGAA GAAGGAGAAA ATTCTGCCCA ACTTTCTTGT
1741ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)