Construct: ORF ccsbBroadEn_12024
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009248.1_s300c1, BRDN0000388109
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IL20RB (53833)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_006713665.4 | 64% | 64% | 1_285del |
| 2 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_011512911.2 | 64% | 64% | 1_285del |
| 3 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_017006632.1 | 64% | 64% | 1_285del |
| 4 | human | 53833 | IL20RB | interleukin 20 receptor sub... | NM_144717.4 | 54.3% | 54.3% | 1_426del |
| 5 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_011512910.3 | 53.4% | 53.4% | 1_441del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 573
- ORF length:
- 507
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GATCACCAAA GATGGCTTCC ACCTGGTTAT TGAGCTGGAG GACCTGGGGC 121 CCCAGTTTGA GTTCCTTGTG GCCTACTGGA GGAGGGAGCC TGGTGCCGAG GAACATGTCA 181 AAATGGTGAG GAGTGGGGGT ATTCCAGTGC ACCTAGAAAC CATGGAGCCA GGGGCTGCAT 241 ACTGTGTGAA GGCCCAGACA TTCGTGAAGG CCATTGGGAG GTACAGCGCC TTCAGCCAGA 301 CAGAATGTGT GGAGGTGCAA GGAGAGGCCA TTCCCCTGGT ACTGGCCCTG TTTGCCTTTG 361 TTGGCTTCAT GCTGATCCTT GTGGTCGTGC CACTGTTCGT CTGGAAAATG GGCCGGCTGC 421 TCCAGTACTC CTGTTGCCCC GTGGTGGTCC TCCCAGACAC CTTGAAAATA ACCAATTCAC 481 CCCAGAAGTT AATCAGCTGC AGAAGGGAGG AGGTGGATGC CTGTGCCACG GCTGTGATGT 541 CTCCTGAGGA ACTCCTCAGG GCCTGGATCT CATACCCAAC TTTCTTGTAC AAAGTtggca 601 ttataagaaa gcattgctta tcaatttgtt gcaacgaac