Construct: ORF ccsbBroadEn_12025
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016547.1_s300c1, BRDN0000391928
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IL20RB (53833)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_006713665.4 | 55.6% | 51.1% | 389_539del;593_792del |
| 2 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_011512911.2 | 55.6% | 51.1% | 389_539del;593_792del |
| 3 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_017006632.1 | 55.6% | 51.1% | 389_539del;593_792del |
| 4 | human | 53833 | IL20RB | interleukin 20 receptor sub... | NM_144717.4 | 47.2% | 43.4% | 1_141del;530_680del;734_933del |
| 5 | human | 53833 | IL20RB | interleukin 20 receptor sub... | XM_011512910.3 | 46.5% | 42.7% | 1_156del;545_695del;749_948del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 507
- ORF length:
- 441
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GCATCTCTTG ATGTGGAGCC CAGTGATCGC GCCTGGAGAA ACAGTGTACT 121 ATTCTGTCGA ATACCAGGGG GAGTACGAGA GCCTGTACAC GAGCCACATC TGGATCCCCA 181 GCAGCTGGTG CTCACTCACT GAAGGTCCTG AGTGTGATGT CACTGATGAC ATCACGGCCA 241 CTGTGCCATA CAACCTTCGT GTCAGGGCCA CATTGGGCTC ACAGACCTCA GCCTGGAGCA 301 TCCTGAAGCA TCCCTTTAAT AGAAACTCAA CCATCCTTAC CCGACCTGGG ATGGAGATCA 361 CCAAAGATGG CTTCCACCTG GTTATTGAGC TGGAGGACCT GGGGCCCCAG TTTGAGTTCC 421 TTGTGGCCTA CTGGAGGAGG GAGCCTGGTG CCGAGGAGAG GCCATTCCCC TGGTACTGGC 481 CCTGTTTGCC TTTGTTGGCT TCATGCTGCC CAACTTTCTT GTACAAAGTt ggcattataa 541 gaaagcattg cttatcaatt tgttgcaacg aac