Construct: ORF ccsbBroadEn_12064

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009203.1_s300c1, BRDN0000388950
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NDFIP2 (54602)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54602 NDFIP2 Nedd4 family interacting pr... NM_019080.2 72% 2.3% 1_282del
2 human 54602 NDFIP2 Nedd4 family interacting pr... XM_006719840.3 71.7% 2.3% 1_282del;317_318insGGT
3 human 54602 NDFIP2 Nedd4 family interacting pr... NM_001161407.1 66% 2.5% 1_282del;715_716ins60
4 mouse 76273 Ndfip2 Nedd4 family interacting pr... NM_001190989.1 61.6% 2.3% (many diffs)
5 mouse 76273 Ndfip2 Nedd4 family interacting pr... NM_029561.4 61.6% 2.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
58
ORF end:
142
ORF length:
84
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAATG
61TTGGCATGGA TCACCACCAG CCGGGGACTG GGCGCTACCA GGTGCTTCTT AATGAAGAGG
121ATAACTCAGA ATCATCGGCT ATAGAGCAGC CACCTACTTC AAACCCAGCA CCGCAGATTG
181TGCAGGCTGC GTCTTCAGCA CCAGCACTTG AAACTGACTC TTCCCCTCCA CCATATAGTA
241GTATTACTGT GGAAGTACCT ACAACTTCAG ATACAGAAGT TTACGGTGAG TTTTATCCCG
301TGCCACCTCC CTATAGCGTT GCTACCTCTC TTCCTACATA CGATGAAGCT GAGAAGGCTA
361AAGCTGCTGC AATGGCAGCT GCAGCAGCAG AAACATCTCA AAGAATTCAG GAGGAAGAGT
421GTCCACCAAG AGATGACTTC AGTGATGCAG ACCAGCTCAG AGTGGGGAAT GATGGCATTT
481TCATGCTGGC ATTTTTCATG GCATTTATTT TCAACTGGCT TGGATTTTGT TTATCCTTCT
541GTATCACCAA TACCATAGCT GGAAGGTATG GTGCTATCTG CGGATTTGGC CTTTCCTTGA
601TCAAATGGAT CCTTATTGTC AGGTTTTCTG ATTATTTTAC TGGATATTTC AATGGACAGT
661ATTGGCTTTG GTGGATATTT CTTGTACTTG GCCTGCTCCT TTTCTTCAGA GGATTTGTTA
721ATTATCTAAA AGTCAGAAAC ATGTCTGAAA GTATGGCAGC TGCTCATAGA ACAAGGTATT
781TCTTCTTATT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
841caatttgttg caacgaac

Download FASTA (ORF) (Full)