Construct: ORF ccsbBroadEn_12076
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006661.1_s300c1, BRDN0000393035
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HYDIN (54768)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54768 | HYDIN | HYDIN axonemal central pair... | NM_001198543.1 | 74.5% | 73% | (many diffs) |
| 2 | human | 54768 | HYDIN | HYDIN axonemal central pair... | NM_001198542.1 | 73.7% | 72.2% | (many diffs) |
| 3 | human | 54768 | HYDIN | HYDIN axonemal central pair... | NM_017558.5 | 68.9% | 67.5% | (many diffs) |
| 4 | human | 100288805 | HYDIN2 | HYDIN axonemal central pair... | NR_103556.2 | 18.4% | (many diffs) | |
| 5 | human | 54768 | HYDIN | HYDIN axonemal central pair... | NM_001270974.2 | 13.7% | 13.5% | (many diffs) |
| 6 | human | 54768 | HYDIN | HYDIN axonemal central pair... | XM_006721206.3 | 13.6% | 13.4% | (many diffs) |
| 7 | human | 54768 | HYDIN | HYDIN axonemal central pair... | XM_011523151.2 | 13.6% | 13.4% | (many diffs) |
| 8 | human | 54768 | HYDIN | HYDIN axonemal central pair... | XM_011523148.1 | 13.6% | 13.4% | (many diffs) |
| 9 | human | 54768 | HYDIN | HYDIN axonemal central pair... | XM_017023346.2 | 13.6% | 13.4% | (many diffs) |
| 10 | human | 54768 | HYDIN | HYDIN axonemal central pair... | XM_011523147.1 | 13.5% | 13.3% | (many diffs) |
| 11 | human | 54768 | HYDIN | HYDIN axonemal central pair... | XM_011523146.2 | 13.5% | 13.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2190
- ORF length:
- 2124
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC AAGTAGAAGA CTTGAGGAGT CCATGGGGGC TGTTCAGATG GGATTGGTCA 121 ATATGTTCAA AGGATTTCAA AGCAAGGTTT TGCCACCCCT GAGTCCAAAG GTGGTTACAG 181 AAGAAGAAGT AAACCGAATG CTTACACCCT CAGAGTTCCT GAAGGAAATG TCCCTGACCA 241 CCGAGCAGAG ACTGGCAAAA ACACGTTTGA TGTGCCGACC ACAGATCATC GAACTCTTAG 301 ATATGGGGGA AACAACACAT CAGAAGTTTT CAGGAATTGA CCTGGATCAG GCATTATTCC 361 AGCCCTTTCC ATCAGAAATT ATATTTCAGA ACTACACTCC CTGTGAAGTC TATGAAGTTC 421 CACTGATTTT GAGGAACAAT GACAAAATTC CAAGGTTGGT GAAAGTTGTG GAAGAAAGTT 481 CGCCTTACTT TAAAGTAATC AGCCCCAAAG ATATTGGCCA CAAAGTGGCT CCTGGAGTGC 541 CTTCCATATT CCGAATCCTC TTTACTCCAG AGGAGAACAA GGATTACGCC CATACGTTGA 601 CCTGTGTTAC TGAAAGAGAA AAGTTTATTG TACCCATCAA AGCTAGAGGG GCACGAGCCA 661 TTCTCGATTT TCCTGACAAG CTGAATTTTT CCACTTGTCC TGTCAAATAC AGCACCCAGA 721 AGATTCTGCT GGTACGAAAC ATTGGCAACA AAAATGCTGT ATTTCACATC AAAACTTGTA 781 GGCCTTTCTC TATAGAACCA GCTATTGGAA CTCTTAATGT GGGAGAGTCC ATGCAACTGG 841 AAGTGGAGTT TGAGCCACAG AGTGTGGGCG ATCACAGTGG AAGACTTATC GTGTGTTATG 901 ACACAGGTGA AAAGGTGTTT GTATCTCTCT ATGGAGCTGC CATAGACATG AATATAAGGC 961 TGGATAAGAA TTCCTTGACC ATCGAGAAAA CCTACATATC TATGGCCAAT CAGCGAACTA 1021 TAACCATTCA CAATCGCAGT AATATCATTG CCCATTTCCT GTGGAAGGTA TTTGCTACCC 1081 AGCAAGAAGA GGACAGAGAA AAATATAGGG CCTGTGATGA TCTGATCAAA GAGGAGAAGG 1141 ATGAGACTGA TGAGTTTTTT GAAGAGTGCA TTACTGATCC TTTACTCCGA GAACATCTTT 1201 CTGTTCTGTC CCGAACCTTT GCGAATCAGA GGAGGCTGGT GCAGGGAGAC AGCAAGCTGT 1261 TCTTCAATAA CGTTTTCACT GTGGAGCCCC TGGAAGGTGA TGTCTGGCCC AACTCATCAG 1321 CTGAAATCAC CGTGTACTTT AACCCACTAG AAGCCAAGCT CTATCAACAG ACCATTTACT 1381 GCGACATTTT AGGCCGAGAA ATCCGTCTGC CCCTCCGAAT CAAAGGGGAA GGCATGGGAC 1441 CTAAGATTCA CTTCAACTTT GAATTGCTGG ATATTGGGAA AGTTTTCACT GGATCTGCAC 1501 ATTGTTATGA GGCGATACTG TACAACAAAG GCAGCATCGA TGCTCTCTTC AACATGACCC 1561 CTCCAACTTC AGCTTTGGGG GCCTGCTTTG TTTTCAGTCC CAAGGAAGGC ATCATTGAAC 1621 CAAGTGGAGT CCAAGCTATC CAGATCTCCT TCAGCTCTAT CATCCTGGGA AACTTTGAAG 1681 AAGAGTTCCT GGTCAATGTC AATGGGTCAC CTGAGCCTGT GAAACTGACC ATTAGAGGCT 1741 GTGTCATTGG ACCTACCTTC CATTTTAATG TTCCAGCTCT GCACTTTGGT GATGTTTCCT 1801 TTGGGTTTCC TCATACCTTG ATATGTTCCC TCAATAATAC CTCTTTGATC CCCATGACTT 1861 ACAAACTGCG TATCCCTGGG GATGGCCTTG GCCATAAAAG CATTTCATAT TGTGAGCAGC 1921 ATGTGGACTA CAAAAGACCA TCTTGGACCA AGGAAGAAAT ATCCTCAATG AAACCAAAAG 1981 AATTCACCAT CTCTCCTGAC TGTGGCACCA TTCGCCCCCA GGGATTTGCT GCTATCAGGG 2041 TGACATTATG CTCCAACACT GTGCAGAAAT ACGAGCTGGC ACTCGTGGTG GACGTGGAGG 2101 GCATCGGAGA AGAGGTGCTG GCGCTCTTAA TTACAGCAAG GTATTGCTCC CCAGCTTGCT 2161 CTTCTCCTGA GTCGCCCCCG AGCCTCCAGT ACCCAACTTT CTTGTACAAA GTtggcatta 2221 taagaaagca ttgcttatca atttgttgca acgaac