Construct: ORF ccsbBroadEn_12077

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016216.1_s300c1, BRDN0000388760
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF111 (54778)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54778 RNF111 ring finger protein 111 NM_001270529.2 13.9% 13.9% 1_2544del
2 human 54778 RNF111 ring finger protein 111 XM_017022343.1 13.9% 13.9% 1_2544del
3 human 54778 RNF111 ring finger protein 111 NM_017610.8 13.8% 13.8% 1_2547del
4 human 54778 RNF111 ring finger protein 111 XM_017022342.1 13.8% 13.8% 1_2547del
5 human 54778 RNF111 ring finger protein 111 XM_017022340.2 13.7% 13.7% 1_2544del;2735_2758del
6 human 54778 RNF111 ring finger protein 111 XM_017022341.1 13.7% 13.7% 1_2544del;2735_2758del
7 human 54778 RNF111 ring finger protein 111 NM_001270530.1 13.7% 13.7% 1_2547del;2738_2761del
8 human 54778 RNF111 ring finger protein 111 XM_017022338.2 13.7% 13.7% 1_2547del;2738_2761del
9 human 54778 RNF111 ring finger protein 111 XM_017022339.2 13.7% 13.7% 1_2571del
10 human 54778 RNF111 ring finger protein 111 NM_001270528.2 13.7% 13.7% 1_2574del
11 human 54778 RNF111 ring finger protein 111 XM_017022337.2 13.6% 13.6% 1_2571del;2762_2785del
12 human 54778 RNF111 ring finger protein 111 NM_001330331.2 13.6% 13.6% 1_2574del;2765_2788del
13 human 54778 RNF111 ring finger protein 111 XM_006720579.3 13.6% 13.6% 1_2574del;2765_2788del
14 human 54778 RNF111 ring finger protein 111 XM_017022336.1 13.5% 13.5% 1_2616del
15 human 54778 RNF111 ring finger protein 111 XM_011521699.2 13.5% 13.5% 1_2631del
16 human 54778 RNF111 ring finger protein 111 XM_006720575.3 13.3% 13.3% 1_2643del;2834_2857del
17 human 54778 RNF111 ring finger protein 111 XM_011521697.3 13.3% 13.3% 1_2655del;2846_2869del
18 human 54778 RNF111 ring finger protein 111 XM_011521696.2 13.2% 13.2% 1_2682del
19 human 54778 RNF111 ring finger protein 111 XM_011521694.2 13.1% 13.1% 1_2682del;2873_2896del
20 mouse 93836 Rnf111 ring finger 111 XM_006511587.3 13.3% 13.8% (many diffs)
21 mouse 93836 Rnf111 ring finger 111 XM_006511586.2 13.3% 13.8% (many diffs)
22 mouse 93836 Rnf111 ring finger 111 NM_033604.2 13.2% 13.7% (many diffs)
23 mouse 93836 Rnf111 ring finger 111 XM_006511582.2 13% 13.6% (many diffs)
24 mouse 93836 Rnf111 ring finger 111 XM_006511583.3 13% 13.6% (many diffs)
25 mouse 93836 Rnf111 ring finger 111 XM_006511584.2 13% 13.6% (many diffs)
26 mouse 93836 Rnf111 ring finger 111 XM_006511581.3 12.1% 12.6% (many diffs)
27 mouse 93836 Rnf111 ring finger 111 XM_006511580.3 12% 12.5% (many diffs)
28 mouse 93836 Rnf111 ring finger 111 XM_017313709.1 12% 12.5% (many diffs)
29 mouse 93836 Rnf111 ring finger 111 XM_006511578.3 12% 12.5% (many diffs)
30 mouse 93836 Rnf111 ring finger 111 XM_006511577.3 11.9% 12.4% (many diffs)
31 mouse 93836 Rnf111 ring finger 111 XM_011242841.2 11.9% 12.4% (many diffs)
32 mouse 93836 Rnf111 ring finger 111 XM_006511576.2 11.9% 12.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
477
ORF length:
411
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TCCTGATATG GCAGGCTATC CTCACATCCG TTACATTTCA TCAGGATTGG
121ATGGAACATC ATTCAGAGGT CCTTTCAGGG GCAATTTTGA GGAACTGATT CATTTGGAAG
181AAAGATTAGG CAATGTCAAT CGTGGAGCAT CCCAGGGGAC AATTGAAAGA TGTACATATC
241CACATAAATA CAAAAAGAGG AAACTGCACT GCAAACAAGA TGGGGAAGAA GGGACTGAGG
301AAGACACAGA GGAAAAATGT ACTATCTGTT TGTCTATTTT AGAGGAAGGT GAAGATGTGA
361GACGTCTTCC ATGTATGCAC CTTTTCCACC AAGTGTGTGT TGACCAATGG TTGATTACCA
421ATAAGAAGTG CCCCATATGC AGAGTGGACA TTGAGGCCCA GCTGCCAAGT GAAAGTTGCC
481CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
541aac

Download FASTA (ORF) (Full)