Construct: ORF ccsbBroadEn_12095

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006300.1_s300c1, BRDN0000456741
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC49 (54839)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54839 LRRC49 leucine rich repeat contain... NM_017691.4 99.8% 99.8% 1054_1056delCAA
2 human 54839 LRRC49 leucine rich repeat contain... NM_001199017.2 99.1% 99.1% 106_120del;1069_1071delCAA
3 human 54839 LRRC49 leucine rich repeat contain... NM_001284357.1 98.1% 97.6% (many diffs)
4 human 54839 LRRC49 leucine rich repeat contain... XM_024449965.1 97.4% 96.9% (many diffs)
5 human 54839 LRRC49 leucine rich repeat contain... NM_001199018.2 92.2% 91.1% (many diffs)
6 human 54839 LRRC49 leucine rich repeat contain... XM_011521715.3 92.2% 91.1% (many diffs)
7 human 54839 LRRC49 leucine rich repeat contain... XM_017022358.1 92.2% 91.1% (many diffs)
8 human 54839 LRRC49 leucine rich repeat contain... NM_001363732.1 56.9% 56.9% 0_1ins882;172_174delCAA
9 human 54839 LRRC49 leucine rich repeat contain... XM_005254492.4 56.9% 56.9% 0_1ins882;172_174delCAA
10 human 54839 LRRC49 leucine rich repeat contain... XM_011521717.2 56.9% 56.9% 0_1ins882;172_174delCAA
11 mouse 102747 Lrrc49 leucine rich repeat contain... NM_001146046.1 84.9% 89.5% (many diffs)
12 mouse 102747 Lrrc49 leucine rich repeat contain... NM_001311095.1 83.2% 87.2% (many diffs)
13 mouse 102747 Lrrc49 leucine rich repeat contain... NM_145616.4 77.5% 81.6% (many diffs)
14 mouse 102747 Lrrc49 leucine rich repeat contain... NM_001146047.1 75.9% 79.5% (many diffs)
15 mouse 102747 Lrrc49 leucine rich repeat contain... XR_001778785.1 53.4% (many diffs)
16 mouse 102747 Lrrc49 leucine rich repeat contain... XM_006510754.3 47.2% 50.7% (many diffs)
17 mouse 102747 Lrrc49 leucine rich repeat contain... XM_017313093.1 47.2% 50.7% (many diffs)
18 mouse 102747 Lrrc49 leucine rich repeat contain... XM_017313094.1 47.2% 50.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2121
ORF length:
2055
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT TCCCGGGAAA TATCGCTCTG TTTCTGGCCG GGCTGCGAAC AACGTGAACT
121GCGGGCTTCA TCTGGTTATT CAAACATCAT CGCTTCCTGA AAAAAACAAA GTTGAATTCA
181AGCTAAATAA AGACACATCG TCATTCCCCG GTAGACTTTT ACAACATGAC CTTGAAAGAA
241ACTACTCAAG TAGGCAAGGT GATCATATTA ATTTGGTGAG CTCATCATTG TCATCATTTC
301CTATTCTTCA ACGTTCTTCT GAAGAGAAAA TTCTTTACTC AGACAGGTTG AGCCTAGAAA
361GACAAAAGCT GACCGTATGT CCTATCATCA ATGGGGAAGA CCACCTTCGT TTGTTGAACT
421TTCAACACAA TTTTATAACT CGGATACAAA ATATTTCTAA TCTACAGAAG TTAATATCGT
481TGGATTTATA TGATAACCAG ATTGAAGAAA TTAGTGGGCT TTCGACTCTG AGATGTCTTC
541GTGTCCTTCT GTTGGGGAAA AACAGAATCA AGAAAATCTC AAATCTGGAG AATCTAAAAA
601GCTTAGATGT CTTGGATCTT CATGGAAATC AGATTACCAA AATTGAAAAT ATTAATCATT
661TGTGTGAGTT GAGAGTTTTA AATCTTGCCA GGAACTTTTT AAGTCATGTT GATAATCTTA
721ATGGGCTGGA TTCACTAACT GAACTTAACT TGCGACACAA TCAAATCACT TTCGTGAGAG
781ATGTGGATAA TTTGCCCTGC CTCCAACATC TCTTTCTCAG CTTTAACAAT ATATCTAGTT
841TTGACAGTGT TTCCTGCCTT GCTGACTCTT CTTCCCTCTC GGACATCACC TTTGATGGCA
901ATCCCATAGC TCAAGAGTCA TGGTACAAAC ACACTGTCCT TCAGAATATG ATGCAGCTGC
961GCCAGCTAGA TATGAAGAGA ATCACGGAAG AAGAAAGGCG TATGGCATCT GTTTTAGCCA
1021AAAAAGAGGA AGAGAAGAAG CGGGAAAGTC ATAAACAATC TTTGCTTAAG GAGAAGAAAA
1081GGTTAACAAT TAACAACGTA GCTCGACAGT GGGACTTGCA ACAACGAGTA GCCAATATTG
1141CTACAAATGA AGATAGAAAA GATTCTGACT CTCCTCAGGA CCCCTGTCAG ATTGATGGAA
1201GCACCCTCTC TGCATTCCCA GAGGAAACAG GGCCTCTAGA CTCAGGACTC AACAATGCTT
1261TACAAGGTTT ATCTGTCATA GACACATACC TTGTTGAAGT GGACGGGGAT ACACTTTCCC
1321TATATGGCTC AGGAGCACTG GAATCTCTGG ATAGGAATTG GAGTGTTCAA ACAGCAGGAA
1381TGATCACAAC AGTCTCCTTC ACTTTCATAG AATTTGATGA AATCGTCCAA GTGCTTCCTA
1441AACTGAAGAT TAAGTTTCCT AATTCTCTGC ACCTTAAATT CAAGGAAACA AATCTTGTAA
1501TGCTGCAGCA ATTTAACGCA CTAGCCCAAC TCCGTCGTAT TGACCAGTTG ACAATTGATC
1561CTCAAGGAAA TCCAGTTGTC AATTTTACAC TCTGGAAATA CTATGTACTG TTTAGGCTAA
1621GCCATTTCAG TATGCAGAAA ATAAATGGAA CAGAGGTGAC ACAGAATGAT ATGATAATGG
1681CTGAAAGGCT CTTTGGAATC CTAGCACATG TAGCATCTTC TGAGTTACCC CAGTATCGTC
1741TGATTTCCAT TCTGGGTGAT GCCAGGAAAA AGCAATTTCG GTATCTACTA GAATCCAAAG
1801GAAAAAAACC TGGTATTATC AACGAAGAAA ATAATGACAG CAAAAGACTT GTAGGAGAAA
1861ACACAAATCG TGCTACATTA AATTATACTA CAAGAGACTT TTATAATGAA AAGCTAGAGG
1921AAATAAAGGA AAAGAAGAAA TTCTGTAAAA CATATATAGA AGACCTTGTG AAGGAAGCCA
1981CAGAAATCAA CATGAAAAAT GAGGCTTTGC AGAAGCTTTG GCCACAGATG TTCATTGAGC
2041TTGTTAGGGA TGCAGTCATA GAAATTCGCA ATAAAAATTC CTATATGAAG CTCTGCCTAC
2101AGCAGATAAC AGACCAAAAA TACCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
2161attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)