Construct: ORF ccsbBroadEn_12108

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009390.1_s300c1, BRDN0000392248
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC19 (54902)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54902 TTC19 tetratricopeptide repeat do... NM_001271420.2 100% 100%
2 human 54902 TTC19 tetratricopeptide repeat do... NM_017775.4 71.8% 71.8% 1_321del
3 human 54902 TTC19 tetratricopeptide repeat do... XM_017024801.2 61.1% 58.8% (many diffs)
4 human 54902 TTC19 tetratricopeptide repeat do... XM_017024802.2 59.8% 58.9% (many diffs)
5 human 54902 TTC19 tetratricopeptide repeat do... XM_024450814.1 33% 31.8% (many diffs)
6 mouse 72795 Ttc19 tetratricopeptide repeat do... NM_028360.2 64% 65.2% (many diffs)
7 mouse 72795 Ttc19 tetratricopeptide repeat do... NM_029704.2 60.7% 61.7% (many diffs)
8 mouse 72795 Ttc19 tetratricopeptide repeat do... XM_006534321.3 58.5% 56.3% (many diffs)
9 mouse 72795 Ttc19 tetratricopeptide repeat do... XR_001780062.1 30.2% (many diffs)
10 mouse 72795 Ttc19 tetratricopeptide repeat do... XR_001780061.1 30.2% (many diffs)
11 mouse 72795 Ttc19 tetratricopeptide repeat do... XR_388537.3 28.1% (many diffs)
12 mouse 72795 Ttc19 tetratricopeptide repeat do... XR_001780063.1 26.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
885
ORF length:
819
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA AGATGAGCCA GAAGAGGCTG AGTTAATTTT GCATGACGCT CTTCGTCTCG
121CCTATCAGAC TGATAACAAG AAGGCCATCA CTTACACTTA TGATTTGATG GCCAACTTAG
181CATTTATACG GGGTCAGCTT GAAAATGCTG AACAACTTTT TAAAGCAACA ATGAGTTACC
241TCCTTGGAGG GGGCATGAAG CAGGAGGACA ATGCAATAAT TGAAATTTCC CTAAAGCTGG
301CCAGTATCTA TGCTGCGCAG AACAGACAGG AATTTGCTGT TGCTGGCTAT GAATTCTGCA
361TTTCAACTCT AGAGGAAAAA ATTGAAAGAG AAAAGGAATT AGCAGAAGAC ATTATGTCAG
421TGGAAGAGAA AGCCAATACC CACCTCCTCT TGGGCATGTG CTTAGACGCC TGTGCTCGCT
481ACCTTCTGTT CTCCAAGCAG CCGTCACAGG CACAAAGGAT GTATGAAAAA GCTCTGCAGA
541TTTCTGAAGA AATACAAGGA GAAAGACACC CACAGACCAT TGTGCTGATG AGTGACCTGG
601CTACTACCCT GGATGCACAG GGCCGCTTTG ATGAGGCCTA TATTTATATG CAAAGGGCAT
661CAGATCTGGC AAGACAGATA AATCATCCTG AGCTACACAT GGTACTCAGT AATCTAGCTG
721CAGTTTTGAT GCACAGAGAA CGATATACAC AAGCAAAAGA GATCTACCAG GAAGCACTGA
781AGCAAGCAAA GCTGAAAAAA GATGAAATTT CTGTACAACA CATCAGGGAA GAGTTGGCTG
841AGCTGTCAAA GAAAAGTAGA CCTTTGACAA ATTCTGTCAA GCTCTACCCA ACTTTCTTGT
901ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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