Construct: ORF ccsbBroadEn_12111

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015033.1_s300c1, BRDN0000388531
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHTF8 (54921)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 113455421 DERPC DERPC proline and glycine r... NM_001002847.3 8.3% 8.3% 1_1440del
2 human 113455421 DERPC DERPC proline and glycine r... NM_001040144.2 8.3% 8.3% 1_1440del
3 human 113455421 DERPC DERPC proline and glycine r... NM_001366603.1 8.3% 8.3% 1_1440del
4 human 113455421 DERPC DERPC proline and glycine r... NM_001366604.1 8.3% 8.3% 1_1440del
5 mouse 214987 Chtf8 CTF8, chromosome transmissi... XM_017312654.1 7.5% 7.5% (many diffs)
6 mouse 214987 Chtf8 CTF8, chromosome transmissi... XM_017312655.1 7.5% 7.5% (many diffs)
7 mouse 214987 Chtf8 CTF8, chromosome transmissi... XM_017312656.1 7.5% 7.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
198
ORF length:
132
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TGGCCCTGCA GGCAAGAGTT TCGTCCCATT TCCTAGAGTG GGGAGCCTCC
121CTGGCACAAA CCCAGCTGCT TTCCCCAGAC CAGGGGGTCC AATGGCTGCA ATGTACCCAA
181ATGGAATGTT GCCCCCTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
241gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)