Construct: ORF ccsbBroadEn_12116

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017690.1_s300c1, BRDN0000396243
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SOHLH2 (54937)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54937 SOHLH2 spermatogenesis and oogenes... NM_001282147.1 100% 100%
2 human 54937 SOHLH2 spermatogenesis and oogenes... NM_017826.3 51.6% 50.2% (many diffs)
3 human 100526761 CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough NM_001198910.2 43.1% 39.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
741
ORF length:
675
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACGAAAAAG
61TTGGCATGGC TTCCTCAATT ATCTGCCAGG AGCACTGCCA GATCTCGGGC CAGGCAAAAA
121TAGACATCTT ATTAGTTGGA GATGTCACTG TGGGCTACCT GGCTGATACT GTACAGAAAC
181TATTTGCAAA CATAGCAGAA GTCACCATCA CCATCAGTGA CACGAAGGAG GCAGCAGCGC
241TTTTGGATGA TTGCATATTC AACATGGTTC TCTTGAAGGT GCCTTCTTCA CTAAGTGCCG
301AGGAGCTGGA AGCCATCAAG TTAATTAGAT TTGGCAAAAA GAAAAATACA CATTCACTGT
361TTGTTTTTAT AATCCCTGAA AATTTTAAAG GTTGTATTTC AGGGCATGGA ATGGATATTG
421CTTTAACTGA ACCACTGACA ATGGAAAAAA TGAGTAATGT GGTAAAATAC TGGACAACAT
481GTCCCTCAAA CACTGTTAAG ACTGAAAACG CAACTGGGCC TGAAGAACTT GGATTGCCCC
541TGCAGAGGTC CTACAGCGAA CACCTGGGAT ATTTTCCTAC TGATCTATTT GCCTGCTCTG
601AATCTTTAAG GAATGGCAAT GGGCTTGAAT TAAATGCTTC GTTGTCAGAG TTCGAGAAAA
661ACAAAAAGAT CTCTCTTCTT CATTCAAGCA AGGAAAAACT AAGAAGGCTG TACAGGAAGC
721ATAGCAGCTT CTGTTTCTGG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
781attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)