Transcript: Human NM_001198910.2

Homo sapiens CCDC169-SOHLH2 readthrough (CCDC169-SOHLH2), mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
CCDC169-SOHLH2 (100526761)
Length:
2600
CDS:
275..1783

Additional Resources:

NCBI RefSeq record:
NM_001198910.2
NBCI Gene record:
CCDC169-SOHLH2 (100526761)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001198910.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000350859 CCGTACATACCTAGCTGAAAT pLKO_005 415 CDS 100% 13.200 6.600 Y CCDC169 n/a
2 TRCN0000015768 CCTTGCATACTGTCAGATATT pLKO.1 1587 CDS 100% 13.200 6.600 Y SOHLH2 n/a
3 TRCN0000337301 CTCTTGAAAGTCAAGTGAAAT pLKO_005 336 CDS 100% 13.200 6.600 Y CCDC169 n/a
4 TRCN0000421063 GCTCCAATTCCTGACTAATAC pLKO_005 1426 CDS 100% 13.200 6.600 Y SOHLH2 n/a
5 TRCN0000337241 GGTTTACATCAAGTTTCTAAA pLKO_005 449 CDS 100% 13.200 6.600 Y CCDC169 n/a
6 TRCN0000015770 CGTACTCTCTTGCCGTATGTA pLKO.1 1178 CDS 100% 5.625 2.813 Y SOHLH2 n/a
7 TRCN0000015772 CCTACGATGCAACTGCTGTAA pLKO.1 1626 CDS 100% 4.950 2.475 Y SOHLH2 n/a
8 TRCN0000015771 CCTGGCTGATACTGTACAGAA pLKO.1 598 CDS 100% 4.950 2.475 Y SOHLH2 n/a
9 TRCN0000337302 GGCTTACCAGAAGATCAACAA pLKO_005 388 CDS 100% 4.950 2.475 Y CCDC169 n/a
10 TRCN0000337242 CAACTGCCTAGGATGCAAGAG pLKO_005 485 CDS 100% 4.050 2.025 Y CCDC169 n/a
11 TRCN0000015769 GCTTGAATTAAATGCTTCGTT pLKO.1 1063 CDS 100% 3.000 1.500 Y SOHLH2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001198910.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12116 pDONR223 100% 43.1% 39.5% None (many diffs) n/a
2 ccsbBroad304_12116 pLX_304 0% 43.1% 39.5% V5 (many diffs) n/a
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