Construct: ORF ccsbBroadEn_12135
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011519.1_s300c1, BRDN0000390986
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STX17 (55014)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55014 | STX17 | syntaxin 17 | XR_001746332.1 | 58.6% | (many diffs) | |
| 2 | human | 55014 | STX17 | syntaxin 17 | NM_017919.3 | 46.4% | 46% | (many diffs) |
| 3 | human | 55014 | STX17 | syntaxin 17 | XM_011518820.3 | 46.4% | 46% | (many diffs) |
| 4 | human | 55014 | STX17 | syntaxin 17 | XM_011518821.3 | 46.4% | 46% | (many diffs) |
| 5 | human | 55014 | STX17 | syntaxin 17 | XM_011518823.3 | 17.1% | 16.5% | (many diffs) |
| 6 | human | 55014 | STX17 | syntaxin 17 | XM_017014875.2 | 17.1% | 16.5% | (many diffs) |
| 7 | human | 55014 | STX17 | syntaxin 17 | XM_024447593.1 | 17.1% | 16.5% | (many diffs) |
| 8 | mouse | 67727 | Stx17 | syntaxin 17 | NM_026343.2 | 38.8% | 42.9% | (many diffs) |
| 9 | mouse | 67727 | Stx17 | syntaxin 17 | XM_006538208.1 | 38.8% | 42.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 495
- ORF length:
- 429
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGAAGATGAA GAAAAAGTGA AATTACGCCG TCTTGAACCA GCTATCCAGA 121 AATTCATTAA GATAGTAATC CCAACAGACC TGGAAAGGTT AAGAAAGCAC CAGATAAATA 181 TTGAGAAGTA TCAAAGGTGC AGAATCTGGG ACAAGTTGCA TGAAGAGCAT ATCAATGCAG 241 GACGTACAGT TCAGCAACTC CGATCCAATA TCCGAGAAAT TGAGAAACTT TGTTTGAAAG 301 TCCGAAAGGA TGACCTAGTA CTTCTGAAGA GAATGATAGA TCCTGTTAAA GAAGAAGCAT 361 CAGCAGCAAC AGCAGAATTT CTCCAACTCC ATTTGGAATC TGTAGAAGAA CTTAAGAAGC 421 AATTTAATGA TGAAGAAACT TTGCTACAGC CTCCTTTGAC CAGATCCATG ACTGTTGGTG 481 GTAATGTATT GTGCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 541 tatcaatttg ttgcaacgaa c