Construct: ORF ccsbBroadEn_12159
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014655.1_s300c1, BRDN0000396905
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARHGAP17 (55114)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_017023390.1 | 14.4% | 14.4% | 1_2037del;2373A>T |
| 2 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | NM_018054.6 | 14.1% | 14.1% | (many diffs) |
| 3 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_024450336.1 | 14.1% | 14.1% | (many diffs) |
| 4 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545878.3 | 13.6% | 13.6% | (many diffs) |
| 5 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545877.3 | 13.6% | 13.6% | (many diffs) |
| 6 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545876.2 | 13.1% | 13.1% | 1_2271del;2607A>T |
| 7 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545875.2 | 12.9% | 12.8% | (many diffs) |
| 8 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | NM_001006634.3 | 12.9% | 12.9% | (many diffs) |
| 9 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545874.3 | 12.5% | 12.5% | (many diffs) |
| 10 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545873.3 | 12.4% | 12.4% | (many diffs) |
| 11 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XR_950811.2 | 10.2% | (many diffs) | |
| 12 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XR_950810.2 | 9.5% | (many diffs) | |
| 13 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XR_950809.2 | 9.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 411
- ORF length:
- 345
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA CACCAAACCC AATAGCCAGG GCCCTCCCAA CCCCATGGCA TTGCCCAGTG 121 AGCATGGACT TGAGCAGCCA TCTCACACCC CTCCCCAGAC TCCAACGCCC CCCAGTACTC 181 CGCCCCTAGG AAAACAGAAC CCCAGTCTGC CAGCTCCTCA GACCCTGGCA GGGGGTAACC 241 CTGAAACTGC ACAGCCACAT GCTGGAACCT TACCGAGACC GAGACCAGTA CCAAAGCCAA 301 GGAACCGGCC CAGCGTGCCC CCACCCCCCC AACCTCCTGG TGTCCACTCA GCTGGGGACA 361 GCAGCCTCAC CAACACAGCA CCAACAGCTT CCAAGATAGT TACAGATGTA TGCCCAACTT 421 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac