Construct: ORF ccsbBroadEn_12192

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012109.1_s300c1, BRDN0000395720
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ELP2 (55250)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55250 ELP2 elongator acetyltransferase... NM_001242879.3 99.8% 99.7% 382A>C;703G>A;1887C>T
2 human 55250 ELP2 elongator acetyltransferase... NM_001242877.3 94.3% 94.2% (many diffs)
3 human 55250 ELP2 elongator acetyltransferase... NM_018255.4 91.4% 91.2% (many diffs)
4 human 55250 ELP2 elongator acetyltransferase... NM_001242878.3 88.8% 88.7% (many diffs)
5 human 55250 ELP2 elongator acetyltransferase... NM_001324466.2 87.2% 87.1% (many diffs)
6 human 55250 ELP2 elongator acetyltransferase... NM_001324468.2 86.5% 81.2% (many diffs)
7 human 55250 ELP2 elongator acetyltransferase... NM_001324465.2 86% 85.9% (many diffs)
8 human 55250 ELP2 elongator acetyltransferase... NM_001324467.2 85.3% 85.2% (many diffs)
9 human 55250 ELP2 elongator acetyltransferase... NM_001242875.3 84.7% 84.6% (many diffs)
10 human 55250 ELP2 elongator acetyltransferase... NM_001242876.3 82.1% 82% (many diffs)
11 human 55250 ELP2 elongator acetyltransferase... XR_430081.2 35.5% (many diffs)
12 human 55250 ELP2 elongator acetyltransferase... NR_136897.2 26.4% (many diffs)
13 human 55250 ELP2 elongator acetyltransferase... NR_040110.3 26.2% (many diffs)
14 human 55250 ELP2 elongator acetyltransferase... NR_136898.2 26.2% (many diffs)
15 human 55250 ELP2 elongator acetyltransferase... NR_137173.2 25.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2334
ORF length:
2268
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GGCACCCGTG CTGGAGACTT CTCACGTGTT TTGCTGCCCA AACCGGGTGC
121GGGGAGTCCT GAACTGGAGC TCTGGGCCCA GAGGACTTCT GGCCTTTGGC ACGTCCTGCT
181CCGTGGTGCT CTATGACCCC CTGAAAAGGG TTGTTGTTAC CAACTTGAAT GGTCACACCG
241CCCGAGTCAA TTGCATACAG TGGATTTGTA AACAGGATGG CTCCCCTTCT ACTGAATTAG
301TTTCTGGAGG ATCTGATAAT CAAGTGATTC ACTGGGAAAT AGAGGATAAT CAGCTTTTAA
361AAGCAGTGCA TCTTCAAGGC CATGAAGGAC CTGTTTATGC GGTGCATGCT GTTTACCAGA
421GGAGGACATC AGATCCTGCA TTATGTCCAC TGATCGTTTC TGCAGCTGCA GATTCTGCTG
481TTCGACTCTG GTCTAAAAAG GGTCCAGAAG GTAGAGATCT TTTCCTAGCA AGCTGTTCAC
541AAGATTGCCT GATAAGAATA TGGAAGCTGT ATATAAAGTC AACATCTTTA GAAACTCAGG
601ATGACGATAA CATAAGACTG AAAGAAAATA CTTTTACCAT AGAAAATGAA AGTGTTAAAA
661TAGCATTTGC TGTTACTCTG GAGACAGTGC TAGCCGGTCA TGAAAACTGG GTAAATGCAG
721TTCACTGGCA ACCTGTGTTT TACAAAGATG GTGTCCTACA GCAGCCAATG AGATTATTAT
781CTGCTTCCAT GGATAAAACC ATGATTCTCT GGGCTCCAGA TGAAGAGTCA GGAGTTTGGC
841TAGAACAGGT TCGAGTAGGT GAAGTAGGTG GGAATACTTT GGGATTTTAT GATTGCCAGT
901TCAATGAAGA TGGCTCCATG ATCATTGCTC ATGCTTTCCA CGGAGCGTTG CACCTTTGGA
961AACAGAATAC AGTTAACCCA AGAGAGTGGA CTCCAGAGAT TGTCATTTCA GGACACTTTG
1021ATGGTGTCCA AGACCTAGTC TGGGATCCAG AAGGAGAATT TATTATCACT GTTGGTACTG
1081ATCAGACAAC TAGACTTTTT GCTCCATGGA AGAGAAAAGA CCAATCACAG GTGACTTGGC
1141ATGAAATTGC AAGGCCTCAG ATACATGGGT ATGACCTGAA ATGTTTGGCA ATGATTAATC
1201GGTTTCAGTT TGTATCTGGA GCAGATGAAA AAGTTCTTCG GGTTTTTTCT GCACCTCGGA
1261ATTTTGTGGA AAATTTTTGT GCCATTACAG GACAATCACT GAATCATGTG CTCTGTAATC
1321AAGATAGTGA TCTTCCAGAA GGAGCCACTG TCCCTGCATT GGGATTATCA AATAAAGCTG
1381TCTTTCAGGG AGATATAGCT TCTCAGCCTT CTGATGAAGA GGAGCTGTTA ACTAGTACTG
1441GTTTTGAGTA TCAGCAGGTG GCCTTTCAGC CCTCCATACT TACTGAGCCT CCCACTGAGG
1501ATCATCTTCT GCAGAATACT TTGTGGCCTG AAGTTCAAAA ACTATATGGG CACGGTTATG
1561AAATATTTTG TGTTACTTGT AACAGTTCAA AGACTCTGCT TGCCTCAGCT TGTAAGGCAG
1621CTAAGAAAGA GCATGCAGCT ATCATTCTTT GGAACACTAC ATCTTGGAAA CAGGTGCAGA
1681ATTTAGTTTT CCACAGTTTG ACAGTCACGC AGATGGCCTT CTCACCTAAT GAGAAGTTCT
1741TACTAGCTGT TTCCAGAGAT CGAACCTGGT CATTGTGGAA AAAGCAGGAT ACAATCTCAC
1801CTGAGTTCGA GCCAGTTTTT AGTCTTTTTG CCTTCACCAA CAAAATTACT TCTGTGCACA
1861GTAGAATTAT TTGGTCTTGT GATTGGAGTC CTGACAGCAA GTATTTCTTC ACTGGGAGTC
1921GAGACAAAAA GGTGGTTGTC TGGGGTGAGT GTGACTCCAC TGATGACTGT ATTGAGCACA
1981ACATTGGCCC CTGCTCCTCA GTCCTGGACG TGGGTGGGGC TGTGACAGCT GTCAGCGTCT
2041GCCCAGTGCT CCACCCTTCT CAACGATACG TGGTTGCAGT AGGATTGGAG TGTGGAAAGA
2101TTTGCTTATA TACCTGGAAA AAGACTGATC AAGTTCCAGA AATAAATGAC TGGACCCACT
2161GTGTAGAAAC AAGTCAAAGC CAAAGTCATA CACTGGCTAT CAGAAAATTA TGCTGGAAGA
2221ATTGCAGTGG AAAAACTGAA CAGAAGGAAG CAGAAGGTGC TGAGTGGTTA CACTTTGCAA
2281GCTGTGGTGA AGATCACACT GTGAAGATAC ACAGAGTCAA TAAATGTGCA CTGTACCCAA
2341CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)