Transcript: Human NR_137173.2

Homo sapiens elongator acetyltransferase complex subunit 2 (ELP2), transcript variant 11, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
ELP2 (55250)
Length:
8298
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_137173.2
NBCI Gene record:
ELP2 (55250)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_137173.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000129206 CCCTGCATTGGGATTATCAAA pLKO.1 1532 3UTR 100% 5.625 7.875 N ELP2 n/a
2 TRCN0000435254 GAGTCCTGACAGCAAGTATTT pLKO_005 2066 3UTR 100% 13.200 10.560 N ELP2 n/a
3 TRCN0000129180 CCAAAGTCATACACTGGCTAT pLKO.1 2226 3UTR 100% 4.050 3.240 N ELP2 n/a
4 TRCN0000130402 GCTGTCTTTCAGGGAGATATA pLKO.1 1557 3UTR 100% 13.200 9.240 N ELP2 n/a
5 TRCN0000430043 GGACATCAGATCCTGCATTAT pLKO_005 394 3UTR 100% 13.200 9.240 N ELP2 n/a
6 TRCN0000428895 TTATGCGGTGCATGCTGTTTA pLKO_005 365 3UTR 100% 13.200 9.240 N ELP2 n/a
7 TRCN0000129382 GATACGTGGTTGCAGTAGGAT pLKO.1 2111 3UTR 100% 3.000 2.100 N ELP2 n/a
8 TRCN0000129112 CCAGAGATTGTCATTTCAGGA pLKO.1 1173 3UTR 100% 2.640 1.848 N ELP2 n/a
9 TRCN0000129363 GCCAAAGTCATACACTGGCTA pLKO.1 2225 3UTR 100% 2.640 1.848 N ELP2 n/a
10 TRCN0000128763 CCATGATCATTGCTCATGCTT pLKO.1 1096 3UTR 100% 0.300 0.210 N ELP2 n/a
11 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 6979 3UTR 100% 4.050 2.025 Y P3H4 n/a
12 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 6979 3UTR 100% 4.050 2.025 Y ORAI2 n/a
13 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 6979 3UTR 100% 4.050 2.025 Y P3H4 n/a
14 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2691 3UTR 100% 5.625 2.813 Y KLHL30 n/a
15 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2691 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_137173.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12192 pDONR223 100% 25.2% None (many diffs) n/a
2 ccsbBroad304_12192 pLX_304 0% 25.2% V5 (many diffs) n/a
3 TRCN0000466320 CGGCAACGTTTCCTCTTTTCCCAT pLX_317 15.1% 25.2% V5 (many diffs) n/a
Download CSV