Construct: ORF ccsbBroadEn_12206

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004309.1_s300c1, BRDN0000398551
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LINC01949 (55338)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55338 LINC01949 long intergenic non-protein... NR_130914.1 15% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
531
ORF length:
462
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGACTCTGG CAGCAAATTT CAAACTGTAT GCCAGACCTG GCCCTTTGCA
121GTGATATAAA ATTTTTCTTG AGGTGTCTGG AAAGATGGCT GAATAGGAAC AGCTCTGCTC
181TGCAGCTCCC AGCGAGATCA ACGCAGAAGG AGATAATTTC TGCATTTCCA ACTAAAGTAC
241CCAGCTCATC TCATTGGGAC TGGTTAGACA GTGGGTGCAG CCCACAGAAG GCAAGCAGAA
301GCAGGGTGGG GTGTCGCCTC ACCCGGGAAG CGCAAGGGGT CAGGGAACTC CCTCCCCTAG
361CCAAGGGAAG CTGTGAGGGA CTGTGCCGTG AGGAACGGGG CATTCCGGCA CAGATACTAT
421GCTTTCCCCA CGGTCTTTGC AACCCACAGA CCAGGAGATT CCCTTGGGTG CCTGCACCAC
481CAGGGCCCTG GGTTTCAAGC AAAAAACTGG GCAGCCATTT GGGCAGACAC TTGCCAACTT
541TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)