Construct: ORF ccsbBroadEn_12222
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003936.1_s300c1, BRDN0000386089
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ELMOD1 (55531)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55531 | ELMOD1 | ELMO domain containing 1 | NM_001308018.1 | 86.2% | 86.2% | 1_135del |
| 2 | human | 55531 | ELMOD1 | ELMO domain containing 1 | NM_018712.4 | 84.7% | 84.7% | 1_153del |
| 3 | human | 55531 | ELMOD1 | ELMO domain containing 1 | XM_017017994.2 | 83.8% | 83.8% | 1_135del;603_604ins24 |
| 4 | human | 55531 | ELMOD1 | ELMO domain containing 1 | XM_017017995.2 | 83.8% | 83.8% | 1_135del;603_604ins24 |
| 5 | human | 55531 | ELMOD1 | ELMO domain containing 1 | NM_001130037.1 | 82.3% | 82.3% | 1_153del;621_622ins24 |
| 6 | mouse | 270162 | Elmod1 | ELMO/CED-12 domain containi... | XM_006511206.3 | 76.2% | 83.2% | (many diffs) |
| 7 | mouse | 270162 | Elmod1 | ELMO/CED-12 domain containi... | XM_006511205.3 | 74.8% | 81.7% | (many diffs) |
| 8 | mouse | 270162 | Elmod1 | ELMO/CED-12 domain containi... | XM_006511207.3 | 73.9% | 80.7% | (many diffs) |
| 9 | mouse | 270162 | Elmod1 | ELMO/CED-12 domain containi... | NM_177769.4 | 72.6% | 79.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 915
- ORF length:
- 849
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AATCGAAACA TCACTGAGGG ATTCTAAAAG TAAGCTGTTG CAGACTTCTG 121 TGAGTGTTCA CCCCGACGCT ATTGAAAAAA CTATAGAAGA TATCATGGAA CTGAAAAAAA 181 TTAATCCTGA CGTAAATCCA CAGCTGGGAA TCTCTCTTCA GGCTTGCCTT CTGCAAATCG 241 TTGGGTACAG GAACCTTATT GCAGATGTGG AAAAACTGCG TAGAGAGGCC TATGATTCTG 301 ATAATCCCCA ACATGAAGAA ATGCTTTTGA AGTTATGGAA ATTCTTGAAG CCCAATACTC 361 CACTGGAATC TCGGATTTCT AAGCAGTGGT GTGAAATTGG TTTCCAAGGT GATGATCCTA 421 AAACAGACTT TCGAGGAATG GGACTTCTGG GACTGTACAA TTTGCAGTAT TTCGCGGAAA 481 GGGATGCCAC AGCAGCTCAG CAGGTCCTGT CTGACTCTCT TCATCCGAAA TGCAGGGATA 541 TCACTAAAGA AGAAATAAGC AAATTCAGCA AAGCAGAATG GGAGAAGAAA AGGATGGATA 601 AGGCAATTGG GTACTCATTT GCAATTGTGG GCATCAATAT AACTGACCTG GCATATAATC 661 TACTGGTCAG CGGAGCTCTA AAAACCCATT TCTACAATAT CGCCCCAGAA GCTCCAACAT 721 TGTCTCACTT TCAGCAAACA TTCTGCTATT TGATGCATGA ATTTCATAAG TTTTGGATCG 781 AAGAGGACCC CATGGACATA ATGGAATTTA ATCGTGTGAG GGAGAAATTC CGCAAGAGGA 841 TCATCAAACA GCTGCAGAAC CCAGACATGG CGCTGTGCCC ACATTTTGCT GCCTCGGAAG 901 GTTTAATCAA CATGTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 961 tatcaatttg ttgcaacgaa c