Construct: ORF ccsbBroadEn_12245
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011939.1_s300c1, BRDN0000390324
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GPATCH2L (55668)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322027.2 | 85.8% | 86% | (many diffs) |
| 2 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322032.1 | 83.8% | 81.9% | (many diffs) |
| 3 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322026.2 | 79.2% | 74.7% | (many diffs) |
| 4 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021433.1 | 77.2% | 73.3% | (many diffs) |
| 5 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322029.1 | 75.6% | 73.9% | (many diffs) |
| 6 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322028.2 | 75.4% | 73.7% | (many diffs) |
| 7 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021432.1 | 73.5% | 71.8% | (many diffs) |
| 8 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322031.1 | 73.4% | 71.7% | (many diffs) |
| 9 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021431.1 | 73.3% | 71.7% | (many diffs) |
| 10 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_001322030.2 | 72% | 70.3% | (many diffs) |
| 11 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_017972.3 | 71.5% | 68.1% | (many diffs) |
| 12 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_006720191.2 | 71.5% | 68.1% | (many diffs) |
| 13 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021430.1 | 71.5% | 68.1% | (many diffs) |
| 14 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NM_017926.4 | 70% | 68.4% | (many diffs) |
| 15 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021429.1 | 70% | 68.4% | (many diffs) |
| 16 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021428.1 | 69.7% | 66.3% | (many diffs) |
| 17 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XM_017021427.1 | 68.2% | 66.6% | (many diffs) |
| 18 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XR_001750417.1 | 57.7% | (many diffs) | |
| 19 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XR_001750415.1 | 35.8% | (many diffs) | |
| 20 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XR_001750416.1 | 30.1% | (many diffs) | |
| 21 | human | 55668 | GPATCH2L | G-patch domain containing 2... | NR_110314.1 | 8.3% | (many diffs) | |
| 22 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XR_001750418.1 | 7.1% | (many diffs) | |
| 23 | human | 55668 | GPATCH2L | G-patch domain containing 2... | XR_001750414.1 | 7.1% | (many diffs) | |
| 24 | mouse | 70373 | Gpatch2l | G patch domain containing 2... | NM_001324488.1 | 75.2% | 75% | (many diffs) |
| 25 | mouse | 70373 | Gpatch2l | G patch domain containing 2... | XM_006516220.3 | 73.1% | 74.1% | (many diffs) |
| 26 | mouse | 70373 | Gpatch2l | G patch domain containing 2... | NM_027405.3 | 63.7% | 63.6% | (many diffs) |
| 27 | mouse | 70373 | Gpatch2l | G patch domain containing 2... | XM_006516219.2 | 62.1% | 63% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1119
- ORF length:
- 1053
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGAGCTGGTA CACGACTTAG CCTCAGCCTT GGAGCAGACA TCTGAGCAGA 121 ATAAGCTTGG TGAACTGTGG GAGGAGATGG CGCTGAGCCC CCGACAGCAG AGGCGGCAGC 181 TTCGGAAACG CCGAGGTCGG AAGCGTCGTT CTGACTTCAC TCACCTGGCA GAGCATACCT 241 GCTGCTACAG CGAGGCCTCT GAGTCAAGTC TGGATGAGGC CACTAAGGAC TGTCGAGAAG 301 TGGCTCCGGT GACCAATTTT AGTGACTCTG ATGACACAAT GGTAGCCAAA CGACACCCAG 361 CTCTCAATGC CATTGTCAAG AGTAAGCAAC ATTCTTGGCA TGAATCTGAC TCCTTTACTG 421 AAAATGCACC TTGTCGACCA CTCAGGCGCA GGCGGAAGGT GAAGCGAGTG ACATCAGAGG 481 TGGCTGCTAG CCTTCAGCAG AAGCTGAAGG TGTCAGATTG GAGCTATGAG AGAGGCTGCA 541 GGTTCAAGTC TGCTAAGAAG CAGCGTCTGT CCCGCTGGAA GGAGAATACT CCCTGGACCT 601 CATCAGGCCA CGGATTGTGT GAATCAGCAG AAAATAGGAC TTTCCTAAGC AAAACAGGAA 661 GGAAAGAAAG GATGGAGTGT GAAACAGATG AACAAAAACA GGGCTCTGAT GAGAACATGT 721 CAGAATGTGA AACCAGCAGT GTGTGTAGCA GCAGTGACAC TGGGCTCTTT ACCAATGATG 781 AAGGGCGACA AGGTGATGAC GAACAGAGTG ATTGGTTCTA TGAAGGAGAA TGTGTCCCAG 841 GATTCACTGT CCCTAATCTT CTGCCCAAGT GGGCTCCTGA TCATTGTTCT GAAGTAGAAA 901 GAATGGATTC TGGATTGGAT AAATTTTCTG ATTCCACATT CCTTTTACCT TCTCGGCCAG 961 CTCAAAGAGG GTACCATACT CGCTTGAATC GTCTACCTGG AGCTGCAGCT CGATGCCTCA 1021 GAAAGGGGCG AAGAAGGCTG GTTGGGAAGG TGATACCTCT CACAGTTAGC TTGGCTCAGT 1081 GGGGAGATAA TATTCCCTAT GGGAGTTGTG TATCCTATTA CCCAACTTTC TTGTACAAAG 1141 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac