Construct: ORF ccsbBroadEn_12263
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006525.1_s300c1, BRDN0000386424
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC11 (55735)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55735 | DNAJC11 | DnaJ heat shock protein fam... | NM_018198.4 | 90.6% | 90.6% | 1080T>C;1096_1251del |
| 2 | human | 55735 | DNAJC11 | DnaJ heat shock protein fam... | XM_017001745.1 | 74.4% | 74.2% | (many diffs) |
| 3 | mouse | 230935 | Dnajc11 | DnaJ heat shock protein fam... | NM_172704.3 | 80.9% | 88% | (many diffs) |
| 4 | mouse | 230935 | Dnajc11 | DnaJ heat shock protein fam... | XM_017320184.1 | 75.8% | 82.4% | (many diffs) |
| 5 | mouse | 230935 | Dnajc11 | DnaJ heat shock protein fam... | XR_001784136.1 | 41.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1587
- ORF length:
- 1521
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GACGGCCTTG AGCGAGGAGG AGCTGGACAA TGAAGACTAT TACTCGTTGC 121 TGAACGTGCG CAGGGAGGCC TCTTCTGAAG AGCTGAAAGC TGCCTACCGG AGGCTCTGTA 181 TGCTCTACCA TCCAGACAAG CACAGAGACC CAGAGCTCAA GTCACAGGCG GAACGACTGT 241 TTAACCTTGT TCACCAGGCT TATGAAGTGC TTAGTGACCC CCAAACCAGG GCCATCTATG 301 ATATATATGG GAAGAGAGGA CTGGAAATGG AAGGATGGGA GGTTGTGGAA AGGAGGAGAA 361 CCCCTGCTGA AATTCGAGAG GAGTTTGAGC GGCTGCAGAG AGAGAGAGAA GAGAGGAGAT 421 TGCAGCAGCG AACCAATCCC AAGGGAACGA TCAGCGTTGG AGTAGATGCC ACCGACCTTT 481 TTGATCGCTA TGATGAGGAG TATGAAGATG TGTCCGGCAG TAGCTTTCCG CAGATTGAAA 541 TTAATAAAAT GCACATATCC CAGTCCATTG AGGCACCCTT GACAGCGACA GACACAGCCA 601 TCCTCTCTGG AAGCCTCTCA ACCCAGAATG GAAATGGAGG AGGTTCCATT AACTTTGCGC 661 TCAGACGAGT AACTTCGGCA AAGGGATGGG GAGAGTTGGA ATTTGGAGCT GGAGACCTAC 721 AGGGGCCTTT GTTCGGTCTC AAGCTGTTCC GTAATCTCAC ACCAAGATGC TTTGTGACAA 781 CAAACTGTGC TCTGCAGTTT TCATCCCGTG GAATCCGACC CGGCCTGACC ACTGTCCTAG 841 CTCGGAACCT AGACAAGAAC ACCGTGGGCT ACCTGCAGTG GCGATGGGGT ATCCAGTCAG 901 CCATGAACAC TAGCATCGTC CGAGACACTA AAACCAGCCA CTTCACTGTG GCCCTGCAGC 961 TGGGAATCCC TCACTCCTTT GCACTGATCA GCTATCAGCA CAAATTCCAA GATGACGATC 1021 AGACTCGTGT GAAAGGATCC CTCAAAGCAG GCTTCTTTGG GACGGTGGTG GAGTACGGAG 1081 CTGAGAGGAA GATCTCCAGG CACAGCGTTT TGGGTGCAGC TGTCAGCGTT GGAGTTCCAC 1141 AGGGCGTTTC TCTCAAAGTC AAGGAATTGG AGAAGCAGAG GGAAAGCGCC GCCACCGATG 1201 TGCTGCAGAA GAAGCAAGAG GCGGAGTCCG CTGTCCGGCT GATGCAGGAA TCTGTCCGAA 1261 GGATAATTGA GGCAGAAGAG TCCAGAATGG GCCTCATCAT CGTCAATGCC TGGTACGGGA 1321 AGTTTGTCAA TGACAAGAGC AGGAAGAGCG AGAAGGTGAA GGTGATTGAC GTGACTGTGC 1381 CCCTGCAGTG CCTGGTGAAG GACTCGAAGC TCATCCTCAC GGAGGCCTCC AAGGCTGGGC 1441 TGCCTGGCTT TTATGACCCG TGTGTGGGGG AAGAGAAGAA CCTGAAAGTG CTCTATCAGT 1501 TCCGGGGCGT CCTGCATCAG GTGATGGTGC TGGACAGTGA GGCCCTCCGG ATACCAAAGC 1561 AGTCCCACAG GATCGATACA GATGGATACC CAACTTTCTT GTACAAAGTt ggcattataa 1621 gaaagcattg cttatcaatt tgttgcaacg aac