Construct: ORF ccsbBroadEn_12319

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013739.1_s300c1, BRDN0000384992
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PARP6 (56965)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_017022418.2 22.9% 22.9% 1_1098del
2 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_011521805.2 21.9% 21.9% 1_1161del
3 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323519.2 17.8% 17.8% 1_1503del
4 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323521.2 17.8% 17.8% 1_1503del
5 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323523.2 17.8% 17.8% 1_1503del
6 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323524.2 17.8% 17.8% 1_1503del
7 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323526.2 17.8% 17.8% 1_1503del
8 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449998.1 17.8% 17.8% 1_1503del
9 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323515.2 17.8% 17.8% 1_1506del
10 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323516.2 17.8% 17.8% 1_1506del
11 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323530.2 17.8% 17.8% 1_1506del
12 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449997.1 17.8% 17.8% 1_1506del
13 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323522.2 17.3% 17.3% 1_1563del
14 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323532.2 17.3% 17.3% 1_1563del
15 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_020214.4 17.3% 17.3% 1_1563del
16 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449996.1 17.3% 17.3% 1_1563del
17 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323525.2 17.2% 17.2% 1_1566del
18 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323528.2 17.2% 17.2% 1_1566del
19 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323531.2 17.2% 17.2% 1_1566del
20 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449995.1 17.2% 17.2% 1_1566del
21 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957664.1 13.4% 1_1824del;2152_2428del
22 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957663.1 13% 1_1905del;2233_2509del
23 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136603.2 12.8% 1_1938del;2266_2542del
24 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136605.2 12.8% 1_1944del;2272_2548del
25 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136599.2 12.8% 1_1947del;2275_2551del
26 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957662.1 12.7% 1_1965del;2293_2569del
27 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136608.2 12.5% 1_2004del;2332_2608del
28 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136609.2 12.5% 1_2004del;2332_2608del
29 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957661.1 12.4% 1_2015del;2343_2619del
30 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_001751361.2 12.4% 1_2018del;2346_2622del
31 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_001751362.2 12.3% 1_2035del;2363_2639del
32 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136611.2 12.3% 1_2054del;2382_2658del
33 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957660.1 12.2% 1_2075del;2403_2679del
34 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957659.1 12.1% 1_2078del;2406_2682del
35 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136607.2 12% 1_2114del;2442_2718del
36 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136610.2 12% 1_2117del;2445_2721del
37 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136606.2 11.8% 1_2166del;2494_2770del
38 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136594.2 11.5% 1_2235del;2563_2839del
39 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136604.2 11.4% 1_2245del;2573_2849del
40 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136596.2 11.4% 1_2257del;2585_2861del
41 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_001751363.1 8% 1_1939del;2122_2123ins144
42 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957665.1 7.9% 1_1975del;2158_2159ins144
43 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_006511380.3 20.8% 21.4% (many diffs)
44 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313534.1 18.6% 19.1% (many diffs)
45 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242801.1 17.6% 18.1% (many diffs)
46 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NM_029922.3 17.3% 17.8% (many diffs)
47 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313533.1 17.3% 17.8% (many diffs)
48 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242800.1 17.2% 17.8% (many diffs)
49 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313532.1 17.2% 17.8% (many diffs)
50 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242799.1 16.9% 17.5% (many diffs)
51 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313531.1 16.9% 17.5% (many diffs)
52 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NM_001205239.1 16.7% 17.3% (many diffs)
53 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313530.1 16.7% 17.3% (many diffs)
54 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242798.1 16.7% 17.2% (many diffs)
55 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313529.1 16.7% 17.2% (many diffs)
56 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242797.1 16.4% 17% (many diffs)
57 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313528.1 16.4% 17% (many diffs)
58 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_006511375.2 16.4% 16.9% (many diffs)
59 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242795.1 16.4% 16.9% (many diffs)
60 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242796.1 16.4% 16.9% (many diffs)
61 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313527.1 16.4% 16.9% (many diffs)
62 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_870764.1 12.3% (many diffs)
63 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NR_038075.1 12.3% (many diffs)
64 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NR_038074.1 12.2% (many diffs)
65 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778990.1 12.1% (many diffs)
66 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778988.1 12% (many diffs)
67 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_870763.1 12% (many diffs)
68 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778989.1 11.8% (many diffs)
69 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778987.1 11.8% (many diffs)
70 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_870762.1 11.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
393
ORF length:
327
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG AAAAGGACAG CACAGGATGC CCTCCAAGGA TGAGCTGGTC CAGAGATACA
121ACAGGATGAA TACCATCCCC CAGACCCGAT CCATTCAGTC ACGGTTCCTG CAGAGTCGGA
181ATCTAAACTG TATAGCACTT TGTGAAGTGA TTACATCTAA GGACCTCCAG AAGCATGGGA
241ACATCTGGGT GTGCCCTGTG TCCGACCATG TCTGCACAAG ATTCTTCTTT GTATATGAGG
301ATGGTCAGGT GGGCGATGCC AACATTAATA CTCAGGACCC CAAGATACAG AAGGAAATCA
361TGCGTGTGAT CGGAACTCAG GTTTACACAA ACTGCCCAAC TTTCTTGTAC AAAGTtggca
421ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)