Construct: ORF ccsbBroadEn_12330
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003201.1_s300c1, BRDN0000387331
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF695 (57116)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57116 | ZNF695 | zinc finger protein 695 | NM_001204221.2 | 99.6% | 98.8% | 251G>A;260T>C |
| 2 | human | 57116 | ZNF695 | zinc finger protein 695 | NR_037892.2 | 55.6% | (many diffs) | |
| 3 | human | 100533111 | ZNF670-ZNF695 | ZNF670-ZNF695 readthrough (... | NR_037894.1 | 41.4% | (many diffs) | |
| 4 | human | 57116 | ZNF695 | zinc finger protein 695 | NM_020394.5 | 30.7% | 26.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 582
- ORF length:
- 516
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG ACTATTGGCA TTCAGGGATG TGGCTCTAGA ATTCTCTCCA GAGGAGTGGG 121 AATGCCTGGA CCCAGCTCAG CGGAGTTTGT ATAGGGATGT GATGTTAGAG AACTACAGAA 181 ACCTGATCTC CCTTGGTGAG GATAGCTTCA ATATGCAATT CCTATTTCAC AGTCTTGCTA 241 TGTCTAAGCC AGAACTGATC ATCTGTCTGG AGGCAAGGAA AGAGCCCTGG AACGTGAACA 301 CAGAGAAGAC AGCCAAACAC TCAGCTTTGT CTTCTTATCT TACTGAAGAC ATTTTGCCAG 361 AGCAGGGCCT GCAAGTTTCA TTCCAAAAAG TGATGCTGAG AAGATATGAA AGATGTTGTC 421 TTGAGAAATT ACGCTTAAGG AATGACTGGG AAATTCCATG TGAAGATGTG CTTGCTTCCC 481 CTTTGCCTTC TGCCATGATT CTAAGTTTCC TGAGGCCTCC CCAGAAGCAG AAGCATGTAA 541 AGCCCACAGA ACCGGTCCAG TCGTCGACCA TCGAGCTGCT TTGCCCAACT TTCTTGTACA 601 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac