Transcript: Human NR_037892.2

Homo sapiens zinc finger protein 695 (ZNF695), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
ZNF695 (57116)
Length:
923
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_037892.2
NBCI Gene record:
ZNF695 (57116)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_037892.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107474 CCTATTTCACAGTCTTGCTAT pLKO.1 305 3UTR 100% 4.950 3.465 N ZNF695 n/a
2 TRCN0000107471 GCTTCAATATGCAATTCCTAT pLKO.1 289 3UTR 100% 4.950 3.465 N ZNF695 n/a
3 TRCN0000107470 CCAGAAGCAGAAGCATGTAAA pLKO.1 609 3UTR 100% 13.200 6.600 Y ZNF695 n/a
4 TRCN0000413158 CTTATCTTACTGAAGACATTT pLKO_005 418 3UTR 100% 13.200 6.600 Y ZNF695 n/a
5 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 245 3UTR 100% 4.950 2.475 Y ZNF493 n/a
6 TRCN0000128659 CCATGATTCTAAGTTTCCTGA pLKO.1 581 3UTR 100% 2.640 1.320 Y LY86-AS1 n/a
7 TRCN0000107472 CGCTTAAGGAATGACTGGGAA pLKO.1 516 3UTR 100% 2.640 1.320 Y ZNF695 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_037892.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12330 pDONR223 100% 55.6% None (many diffs) n/a
2 ccsbBroad304_12330 pLX_304 0% 55.6% V5 (many diffs) n/a
3 TRCN0000465790 ATTTCATTACTAATATTCAGCCAT pLX_317 60.4% 55.6% V5 (many diffs) n/a
4 ccsbBroadEn_15936 pDONR223 0% 43% None (many diffs) n/a
5 ccsbBroad304_15936 pLX_304 0% 43% V5 (many diffs) n/a
6 TRCN0000471219 TTCTAAAATCCCTGGAGTTCTTAT pLX_317 100% 43% V5 (many diffs) n/a
7 ccsbBroadEn_15935 pDONR223 0% 28.1% None (many diffs) n/a
8 ccsbBroad304_15935 pLX_304 0% 28.1% V5 (many diffs) n/a
9 TRCN0000470953 TCTCCTGAACACTATGAGACCGTA pLX_317 100% 28.1% V5 (many diffs) n/a
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