Construct: ORF ccsbBroadEn_12336
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009945.1_s300c1, BRDN0000390715
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP10D (57205)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57205 | ATP10D | ATPase phospholipid transpo... | XM_005248120.4 | 37.9% | 37.8% | (many diffs) |
| 2 | human | 57205 | ATP10D | ATPase phospholipid transpo... | XM_005248119.4 | 37.6% | 37.5% | 1592A>T;1594_1595insGTATGAATG;1597_4233del |
| 3 | human | 57205 | ATP10D | ATPase phospholipid transpo... | NM_020453.4 | 37.2% | 37.1% | (many diffs) |
| 4 | human | 57205 | ATP10D | ATPase phospholipid transpo... | XM_011513722.2 | 32.6% | 32.6% | (many diffs) |
| 5 | human | 57205 | ATP10D | ATPase phospholipid transpo... | XR_001741295.1 | 31.7% | (many diffs) | |
| 6 | human | 57205 | ATP10D | ATPase phospholipid transpo... | XR_925154.2 | 31.5% | (many diffs) | |
| 7 | mouse | 231287 | Atp10d | ATPase, class V, type 10D | NM_153389.3 | 30.6% | 31.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1671
- ORF length:
- 1605
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TGAGGCTCTC CAATGGGCCA GATATCACTG GCGACGGCTG ATCAGAGGTG 121 CAACCAGGGA TGATGATTCA GGGCCATACA ACTATTCCTC GTTGCTCGCC TGTGGGCGCA 181 AGTCCTCTCA GACCCCTAAA CTGTCAGGAA GGCACCGGAT TGTTGTTCCC CACATCCAGC 241 CCTTCAAGGA TGAGTATGAG AAGTTCTCCG GAGCCTATGT GAACAATCGA ATACGAACAA 301 CAAAGTACAC ACTTCTGAAT TTTGTGCCAA GAAATTTATT TGAACAATTT CACAGAGCTG 361 CCAATTTATA TTTCCTGTTC CTAGTTGTCC TGAACTGGGT ACCTTTGGTA GAAGCCTTCC 421 AAAAGGAAAT CACCATGTTG CCTCTGGTGG TGGTCCTTAC AATTATCGCA ATTAAAGATG 481 GCCTGGAAGA TTATCGGAAA TACAAAATTG ACAAACAGAT CAATAATTTA ATAACTAAAG 541 TTTATAGTAG GAAAGAGAAA AAATACATTG ACCGATGCTG GAAAGACGTT ACTGTTGGGG 601 ACTTTATTCG CCTCTCCTGC AACGAGGTCA TCCCTGCAGA CATGGTACTA CTCTTTTCCA 661 CTGATCCAGA TGGAATCTGT CACATTGAGA CTTCTGGTCT TGATGGAGAG AGCAATTTAA 721 AACAGAGGCA GGTGGTTCGG GGATATGCAG AACAGGACTC TGAAGTTGAT CCTGAGAAGT 781 TTTCCAGTAG GATAGAATGT GAAAGCCCAA ACAATGACCT CAGCAGATTC CGAGGCTTCC 841 TAGAACATTC CAACAAAGAA CGCGTGGGTC TCAGTAAAGA AAATTTGTTG CTTAGAGGAT 901 GCACCATTAG AAACACAGAG GCTGTTGTGG GCATTGTGGT TTATGCAGGC CATGAAACCA 961 AAGCAATGCT GAACAACAGT GGGCCACGGT ATAAGCGCAG CAAATTAGAA AGAAGAGCAA 1021 ACACAGATGT CCTCTGGTGT GTCATGCTTC TGGTCATAAT GTGCTTAACT GGCGCAGTAG 1081 GTCATGGAAT CTGGCTGAGC AGGTATGAAA AGATGCATTT TTTCAATGTT CCCGAGCCTG 1141 ATGGACATAT CATATCACCA CTGTTGGCAG GATTTTATAT GTTTTGGACC ATGATCATTT 1201 TGTTACAGCT TGGACAAATA TATTTCATTC AAAGTGATGT GGATTTCTAC AATGAAAAAA 1261 TGGATTCTAT TGTTCAGTGC CGAGCCCTGA ACATCGCCGA GGATCTGGGA CAGATTCAGT 1321 ACCTCTTTTC CGATAAGACA GGAACCCTCA CTGAGAATAA GATGGTTTTT CGAAGATGTA 1381 GTGTGGCAGG ATTTGATTAC TGCCATGAAG AAAATGCCAG GAGGTTGGAG TCCTATCAGG 1441 AAGCTGTCTC TGAAGATGAA GATTTTATAG ACACAGTCAG TGGTTCCCTC AGCAATATGG 1501 CAAAACCGAG AGCCCCCAGC TGCAGGACAG TTCATAATGG GCCTTTGGGA AATAAGCCCT 1561 CAAATCATCT TGCTGGGAGC TCTTTTACTC TAGGAAGTGG AGAAGGAGCC AGTGAAGTGC 1621 CTCATTCCAG ACAGGCTGCT TTCAGTAGCC CCATTGTAAG TATGAATGCA TGCCCAACTT 1681 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac