Construct: ORF ccsbBroadEn_12347

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006484.1_s300c1, BRDN0000457246
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLEKHG5 (57449)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_001265594.2 100% 100%
2 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_001042664.1 92.4% 91.1% 2733_2932del;2991_3018del
3 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_001042665.1 92.4% 91.1% 2733_2932del;2991_3018del
4 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_020631.5 92.4% 91.1% 2733_2932del;2991_3018del
5 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_001042663.2 87.5% 86.3% 1_168del;2901_3100del;3159_3186del
6 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_001265593.1 86.5% 85.3% 1_207del;2940_3139del;3198_3225del
7 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_198681.3 85.8% 84.6% 1_231del;2964_3163del;3222_3249del
8 human 57449 PLEKHG5 pleckstrin homology and Rho... NM_001265592.1 85.7% 84.5% 1_237del;2970_3169del;3228_3255del
9 mouse 269608 Plekhg5 pleckstrin homology domain ... XM_006538928.1 74.4% 75.9% (many diffs)
10 mouse 269608 Plekhg5 pleckstrin homology domain ... XM_006538927.1 73.2% 74.7% (many diffs)
11 mouse 269608 Plekhg5 pleckstrin homology domain ... XM_006538926.1 73.1% 74.6% (many diffs)
12 mouse 269608 Plekhg5 pleckstrin homology domain ... NM_001285999.1 72.2% 73.7% (many diffs)
13 mouse 269608 Plekhg5 pleckstrin homology domain ... XM_011250266.1 71.8% 73.3% (many diffs)
14 mouse 269608 Plekhg5 pleckstrin homology domain ... XM_006538925.2 70.4% 71.9% (many diffs)
15 mouse 269608 Plekhg5 pleckstrin homology domain ... XM_006538923.3 70.3% 71.7% (many diffs)
16 mouse 269608 Plekhg5 pleckstrin homology domain ... NR_104381.1 60.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2856
ORF length:
2790
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA TTATGATGGG CATGTCCGCT TCGACCTTCC CCCACAAGGC TCTGTGCTGG
121CCCGGAACGT GTCCACCCGG TCATGCCCGC CGCGCACCAG CCCCGCAGTG GACTTGGAGG
181AGGAGGAGGA GGAGAGCTCT GTGGATGGCA AAGGGGACCG GAAGAGCACA GGCCTGAAAC
241TCTCCAAGAA GAAAGCAAGG AGGAGACACA CGGATGACCC AAGCAAGGAA TGCTTCACTC
301TGAAATTTGA CCTGAATGTG GACATTGAGA CAGAGATCGT CCCAGCCATG AAGAAGAAGT
361CACTGGGGGA GGTGCTGCTG CCTGTATTTG AAAGGAAGGG CATTGCGCTG GGCAAAGTGG
421ACATCTACCT GGACCAGTCC AACACACCCC TGTCCCTCAC CTTCGAGGCC TACAGGTTCG
481GGGGACACTA CCTTCGTGTC AAAGCCCCAG CCAAGCCTGG AGATGAGGGC AAGGTGGAGC
541AGGGCATGAA GGACTCCAAG TCCCTGAGTT TGCCGATTCT GCGGCCAGCT GGGACCGGGC
601CCCCCGCCCT GGAGCGTGTG GACGCCCAGA GCCGCCGGGA GAGCCTGGAC ATCTTGGCCC
661CTGGCCGCCG CCGCAAGAAC ATGTCGGAGT TCCTGGGGGA GGCGAGCATC CCCGGGCAGG
721AGCCCCCCAC GCCCTCCAGC TGCTCTCTGC CCAGCGGCAG CAGTGGCAGC ACCAACACTG
781GCGACAGCTG GAAGAACCGG GCGGCCAGTC GCTTCAGCGG CTTTTTCAGC TCCGGCCCCA
841GCACCAGCGC CTTTGGCCGG GAGGTAGACA AGATGGAGCA GCTGGAGGGC AAGCTGCACA
901CCTACAGCCT CTTCGGGCTG CCCAGGCTGC CCCGGGGGCT GCGCTTCGAC CATGACTCCT
961GGGAGGAGGA GTACGATGAA GACGAGGATG AGGACAATGC CTGCCTGAGG CTGGAGGACA
1021GCTGGCGGGA GCTCATTGAT GGGCATGAGA AGCTGACCCG GCGGCAGTGC CACCAGCAGG
1081AGGCGGTGTG GGAGCTGCTG CACACGGAGG CCTCCTACAT CAGGAAACTG CGGGTGATCA
1141TCAACCTGTT CCTGTGCTGC CTCCTGAACC TGCAAGAGTC AGGGCTGCTG TGTGAGGTGG
1201AGGCGGAGCG CCTGTTCAGC AACATCCCGG AGATCGCGCA GCTGCACCGC AGGCTGTGGG
1261CTAGCGTGAT GGCGCCGGTG CTGGAGAAGG CGCGGCGCAC GCGAGCGCTG CTACAGCCCG
1321GGGACTTCCT CAAAGGCTTC AAGATGTTCG GCTCGCTCTT CAAGCCCTAC ATCCGCTACT
1381GCATGGAGGA GGAGGGCTGC ATGGAGTACA TGCGCGGCCT GCTGCGCGAC AACGACCTCT
1441TCCGGGCCTA CATCACGTGG GCGGAGAAGC ACCCACAGTG CCAGAGGCTG AAGCTGAGCG
1501ACATGCTGGC CAAACCCCAC CAGCGGCTCA CCAAGTACCC GCTGCTGCTC AAGTCGGTGC
1561TGAGGAAGAC CGAGGAGCCG CGCGCCAAGG AGGCCGTCGT CGCCATGATC GGCTCCGTGG
1621AGCGCTTCAT CCACCACGTG AACGCGTGCA TGCGGCAGCG GCAGGAGCGG CAGCGGCTGG
1681CGGCCGTGGT GAGCCGCATC GACGCCTACG AGGTGGTGGA AAGCAGCAGC GACGAAGTGG
1741ACAAGCTCCT GAAGGAATTT CTGCACCTGG ACTTGACAGC GCCCATCCCT GGCGCCTCCC
1801CGGAGGAGAC GCGGCAGCTG CTGCTGGAGG GGAGCCTGAG GATGAAGGAG GGGAAGGACA
1861GCAAGATGGA TGTGTACTGC TTCCTCTTCA CGGATCTGCT GTTGGTGACC AAAGCAGTGA
1921AGAAGGCAGA GAGGACCAGG GTCATCAGGC CACCCCTGCT CGTGGACAAG ATTGTGTGCC
1981GGGAGCTACG GGACCCTGGG TCCTTCCTCC TTATCTACCT GAATGAGTTT CACAGTGCTG
2041TAGGGGCCTA CACGTTCCAG GCCAGTGGCC AGGCCTTGTG CCGTGGCTGG GTGGACACCA
2101TTTACAATGC CCAGAACCAG CTGCAACAGC TGCGTGCACA GGAGCCCCCA GGCAGTCAGC
2161AGCCCCTGCA GAGCCTGGAA GAGGAGGAGG ATGAGCAGGA GGAGGAAGAG GAGGAGGAGG
2221AGGAGGAGGA GGAAGGCGAG GACAGTGGCA CTTCAGCTGC CAGCTCCCCT ACCATCATGC
2281GGAAAAGCAG CGGCAGCCCC GACTCTCAGC ACTGTGCCTC AGATGGCTCC ACGGAGACCC
2341TGGCCATGGT TGTGGTAGAG CCTGGGGACA CGCTGTCCTC CCCCGAGTTC GACAGCGGTC
2401CTTTCAGCTC CCAGTCTGAT GAGACCTCTC TCAGCACCAC TGCCTCATCT GCCACGCCCA
2461CCAGTGAGCT GCTGCCCCTG GGTCCGGTGG ACGGCCGCTC CTGCTCCATG GACTCTGCCT
2521ACGGCACCCT CTCCCCAACC TCCTTACAAG ACTTTGTGGC CCCAGGCCCA ATGGCAGAGC
2581TAGTGCCTCG GGCCCCAGAG TCCCCACGAG TTCCTTCCCC TCCACCCTCG CCCCGTCTCC
2641GCCGCCGCAC CCCTGTCCAG CTGTTGAGCT GCCCGCCCCA CCTGCTCAAG TCTAAGTCCG
2701AGGCCAGCCT CCTCCAGCTG CTGGCAGGGG CTGGCACCCA TGGGACACCC TCTGCCCCCA
2761GCCGCAGCCT GTCAGAGCTC TGCCTGGCTG TTCCAGCCCC AGCACAGGAA GCTGACCCTG
2821GCCCAGCTCT ACCGAATCAG GACCACCCTG CTGCTTACCC AACTTTCTTG TACAAAGTTG
2881Gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)