Construct: ORF ccsbBroadEn_12364
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008911.1_s300c1, BRDN0000389588
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STAMBPL1 (57559)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | NM_020799.4 | 96.4% | 96.5% | 1_45del;750G>A |
| 2 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_006717928.2 | 96.4% | 96.5% | 1_45del;750G>A |
| 3 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_006717930.3 | 96.4% | 96.5% | 1_45del;750G>A |
| 4 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_011539983.1 | 96.4% | 96.5% | 1_45del;750G>A |
| 5 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_011539985.2 | 96.4% | 96.5% | 1_45del;750G>A |
| 6 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_017016453.1 | 96.4% | 96.5% | 1_45del;750G>A |
| 7 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_017016455.1 | 96.4% | 96.5% | 1_45del;750G>A |
| 8 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_017016456.1 | 96.4% | 96.5% | 1_45del;750G>A |
| 9 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_017016457.2 | 85.9% | 86% | 1_45del;750G>A;903_904ins138 |
| 10 | human | 57559 | STAMBPL1 | STAM binding protein like 1 | XM_017016458.1 | 78.3% | 78.3% | 0_1ins273;432G>A |
| 11 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | NM_029682.4 | 83.7% | 87.8% | (many diffs) |
| 12 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_006527451.3 | 83.7% | 87.8% | (many diffs) |
| 13 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_006527452.3 | 83.7% | 87.8% | (many diffs) |
| 14 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_006527453.3 | 83.7% | 87.8% | (many diffs) |
| 15 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_006527454.3 | 83.7% | 87.8% | (many diffs) |
| 16 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_006527456.3 | 83.7% | 87.8% | (many diffs) |
| 17 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_017318308.1 | 83.7% | 87.8% | (many diffs) |
| 18 | mouse | 76630 | Stambpl1 | STAM binding protein like 1 | XM_006527457.3 | 54.7% | 56.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1329
- ORF length:
- 1263
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TGACCATACA GATGTTTCCC TAAGCCCAGA AGAGCGAGTC CGTGCCCTAA 121 GCAAGCTTGG TTGTAATATC ACCATCAGTG AAGACATCAC TCCACGACGT TACTTTAGGT 181 CTGGAGTAGA GATGGAGAGG ATGGCGTCTG TGTATTTGGA AGAAGGAAAT TTGGAAAATG 241 CCTTTGTTCT TTATAATAAA TTTATAACCT TATTTGTAGA AAAGCTTCCT AACCATCGAG 301 ATTACCAGCA ATGTGCAGTA CCTGAAAAGC AGGATATTAT GAAGAAACTG AAGGAGATTG 361 CATTCCCAAG GACAGATGAA TTGAAAAACG ACCTTTTAAA GAAATATAAC GTAGAATACC 421 AAGAATATTT GCAAAGCAAA AACAAATATA AAGCTGAAAT TCTCAAAAAA TTGGAGCATC 481 AGAGATTGAT AGAGGCAGAA AGGAAGCGGA TTGCTCAGAT GCGCCAGCAG CAGCTAGAAT 541 CGGAGCAGTT TCTGTTTTTC GAAGATCAAC TCAAGAAGCA AGAGTTAGCC CGAGGTCAAA 601 TGCGAAGTCA GCAAACCTCA GGGCTGTCAG AGCAGATTGA TGGGAGCGCT TTGTCCTGCT 661 TTTCCACACA CCAGAACAAT TCCTTGCTGA ATGTATTTGC AGATCAACCT AATAAAAGTG 721 ATGCAACCAA TTATGCTAGC CACTCTCCTC CTGTAAACAG GGCCTTAACA CCAGCTGCTA 781 CTCTAAGTGC TGTTCAGAAT TTAGTGGTTG AAGGACTGCG ATGTGTAGTT TTGCCAGAAG 841 ATCTTTGCCA CAAATTTCTG CAACTGGCAG AATCTAATAC AGTGAGAGGA ATAGAAACCT 901 GTGGAATACT CTGTGGAAAA CTGACACATA ATGAATTTAC TATTACCCAT GTAATTGTGC 961 CAAAGCAGTC TGCGGGACCA GACTATTGTG ACATGGAGAA TGTAGAGGAA TTATTCAATG 1021 TTCAGGATCA ACATGATCTC CTCACTCTAG GATGGATCCA TACACATCCC ACTCAAACTG 1081 CATTTTTATC CAGCGTTGAT CTTCACACTC ACTGTTCCTA TCAACTCATG TTGCCAGAGG 1141 CCATTGCCAT TGTTTGCTCA CCAAAGCATA AAGACACTGG CATCTTCAGG CTCACCAATG 1201 CTGGCATGCT TGAGGTTTCT GCTTGTAAAA AAAAGGGCTT TCATCCACAC ACCAAGGAGC 1261 CCAGGCTGTT CAGTATATGC AAACATGTGT TGGTAAAAGA CATAAAAATA ATTGTGTTGG 1321 ATCTGAGGTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1381 tttgttgcaa cgaac