Transcript: Mouse XM_017318308.1

PREDICTED: Mus musculus STAM binding protein like 1 (Stambpl1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Stambpl1 (76630)
Length:
2346
CDS:
776..2086

Additional Resources:

NCBI RefSeq record:
XM_017318308.1
NBCI Gene record:
Stambpl1 (76630)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017318308.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222019 CCTAAGCAAACTTGGTTGTAA pLKO.1 871 CDS 100% 5.625 7.875 N Stambpl1 n/a
2 TRCN0000222016 CGGACCTGCTAAGGAAATATA pLKO.1 1143 CDS 100% 15.000 12.000 N Stambpl1 n/a
3 TRCN0000334405 CGGACCTGCTAAGGAAATATA pLKO_005 1143 CDS 100% 15.000 12.000 N Stambpl1 n/a
4 TRCN0000073966 GCTATGCCTGACCATACAGAT pLKO.1 818 CDS 100% 4.950 3.960 N STAMBPL1 n/a
5 TRCN0000348311 TTTCAGAAGTGACTGATATTT pLKO_005 2146 3UTR 100% 15.000 10.500 N Stambpl1 n/a
6 TRCN0000222017 CGGAGTGGAAATGGAAAGGAT pLKO.1 937 CDS 100% 3.000 2.100 N Stambpl1 n/a
7 TRCN0000334404 CGGAGTGGAAATGGAAAGGAT pLKO_005 937 CDS 100% 3.000 2.100 N Stambpl1 n/a
8 TRCN0000222018 GCTTGAGGTTTCTACTTGTAA pLKO.1 1963 CDS 100% 5.625 3.375 N Stambpl1 n/a
9 TRCN0000334326 GCTTGAGGTTTCTACTTGTAA pLKO_005 1963 CDS 100% 5.625 3.375 N Stambpl1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017318308.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12364 pDONR223 100% 83.7% 87.8% None (many diffs) n/a
2 ccsbBroad304_12364 pLX_304 0% 83.7% 87.8% V5 (many diffs) n/a
3 TRCN0000480021 CTGAATGGTCAGGTTACATATGTT pLX_317 36.2% 83.7% 87.8% V5 (many diffs) n/a
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