Construct: ORF ccsbBroadEn_12366
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017871.1_s300c1, BRDN0000386519
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SIPA1L2 (57568)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_017001897.2 | 31.1% | 31.1% | 1_3516del;3964A>G;5100C>T |
| 2 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_017001898.2 | 31.1% | 31.1% | 1_3516del;3964A>G;5100C>T |
| 3 | human | 57568 | SIPA1L2 | signal induced proliferatio... | NM_020808.4 | 30.8% | 30.8% | (many diffs) |
| 4 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_005273211.2 | 30.8% | 30.8% | (many diffs) |
| 5 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_005273212.4 | 30.8% | 30.8% | (many diffs) |
| 6 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_005273213.4 | 30.8% | 30.8% | (many diffs) |
| 7 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_011544243.2 | 30.8% | 30.8% | (many diffs) |
| 8 | human | 57568 | SIPA1L2 | signal induced proliferatio... | XM_017001896.1 | 30.8% | 30.8% | (many diffs) |
| 9 | mouse | 244668 | Sipa1l2 | signal-induced proliferatio... | XM_006531025.1 | 26.3% | 27.9% | (many diffs) |
| 10 | mouse | 244668 | Sipa1l2 | signal-induced proliferatio... | NM_001081337.1 | 26% | 27.6% | (many diffs) |
| 11 | mouse | 244668 | Sipa1l2 | signal-induced proliferatio... | XM_006531024.1 | 26% | 27.6% | (many diffs) |
| 12 | mouse | 244668 | Sipa1l2 | signal-induced proliferatio... | XM_011248389.1 | 23.9% | 25.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1662
- ORF length:
- 1596
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGCAAGCAGG CACCCGGAAA CCAAATGGCA TGGCCCACCT TCCAAAGTCC 121 TGGGTTCCTA TAAAGAAAGA GCTCTGCAGA AAGATGGAAG TTGCAAAGAT TCCCCCAATA 181 AGCTTTCTCA CATTGGGGAT AAAAGTTGCT CCAGTCACTC CAGCAGCAAC ACGCTCTCCA 241 GCAACACCTC CAGCAACAGT GACGACAAGC ACTTTGGGTC TGGCGACCTG ATGGACCCCG 301 AATTACTGGG GCTGACCTAC ATCAAAGGGG CCTCCACCGA CAGTGGCATC GACACGGCCC 361 CCTGCATGCC TGCCACCATC CTCGGCCCTG TGCACCTGGC AGGCAGCAGG TCCCTGATCC 421 ACAGCCGGGC CGAGCAGTGG GCTGATGCTG CCGACGTCTC TGGGCCTGAC GACGAGCCAG 481 CCAAGTTATA TTCTGTGCAT GGCTACGCGT CCGCCATCTC CGCCGGCAGT GCTGCGGAAG 541 GCAGCATGGG CGATCTCAGT GAGATATCCT CTCATTCCAG TGGTTCTCAC CATTCAGGAA 601 GCCCTTCAGC TCACTGTTCA AAAAGTAGTG GGTCTCTGGA TTCATCCAAA GTCTACATCG 661 TGTCTCACAG CAGCGGACAA CAGGTTCCCG GGTCCATGTC CAAGCCCTAC CACAGACAAG 721 GGGCAGTGAA CAAATATGTC ATCGGCTGGA AGAAATCGGA GGGCAGCCCA CCGCCCGAGG 781 AGCCTGAAGT GACTGAATGT CCCGGGATGT ATAGTGAGAT GGATGTCATG TCCACAGCAA 841 CTCAGCATCA GACAGTGGTG GGAGATGCTG TTGCAGAGAC TCAACATGTT CTGTCTAAAG 901 AAGATTTTCT GAAATTGATG CTTCCTGACA GCCCCTTAGT GGAGGAGGGG CGAAGAAAGT 961 TTTCGTTCTA TGGGAACCTG TCTCCAAGGA GGTCGCTTTA CCGCACGCTG TCTGACGAGA 1021 GCATCTGCAG CAACAGGAGG GGGTCCTCCT TTGGCAGTTC CCGGAGTTCC GTGCTTGACC 1081 AGGCCCTGCC CAACGACATT CTGTTCAGCA CCACCCCACC CTACCACAGC ACGCTGCCTC 1141 CGCGGGCCCA CCCCGCACCC AGCATGGGGA GCCTGAGAAA TGAGTTCTGG TTCTCCGATG 1201 GGTCCTTATC AGATAAGTCC AAGTGCGCAG ATCCTGGCCT GATGCCCCTC CCGGACACAG 1261 CCACAGGGTT AGATTGGACC CACCTCGTGG ATGCTGCACG GGCATTTGAA GACCAGAGGG 1321 TGGCATCCTT CTGCACCCTG ACAGATATGC AGCATGGGCA GGACCTGGAA GGGGCCCAAG 1381 AGCTGCCCTT ATGTGTAGAT CCAGGCAGTG GCAAAGAGTT CATGGACACA ACTGGGGAGC 1441 GTTCTCCATC ACCACTGACC GGGAAAGTCA ATCAGCTGGA ATTAATTCTT CGACAACTCC 1501 AGACCGACCT TCGGAAGGAA AAACAAGACA AGGCCGTTCT CCAAGCAGAA GTGCAGCACC 1561 TGAGACAGGA CAACATGAGA CTGCAGGAGG AGTCCCAGAC CGCGACAGCT CAGCTGCGGA 1621 AATTCACAGA ATGGTTTTTC ACCACCATTG ACAAAAAATC TTACCCAACT TTCTTGTACA 1681 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac