Construct: ORF ccsbBroadEn_12386
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016032.1_s300c1, BRDN0000389865
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUGT1P4-STRA6LP-CCDC180 (57653)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100499483 | CCDC180 | coiled-coil domain containi... | NM_001348010.2 | 91.4% | 91% | (many diffs) |
| 2 | human | 100499483 | CCDC180 | coiled-coil domain containi... | NM_020893.4 | 48.8% | 48.7% | (many diffs) |
| 3 | human | 57653 | SUGT1P4-STRA6LP-CCDC180 | SUGT1P4-STRA6LP-CCDC180 rea... | NR_036529.1 | 39.9% | (many diffs) | |
| 4 | human | 57653 | SUGT1P4-STRA6LP-CCDC180 | SUGT1P4-STRA6LP-CCDC180 rea... | NR_036527.1 | 39.2% | (many diffs) | |
| 5 | human | 57653 | SUGT1P4-STRA6LP-CCDC180 | SUGT1P4-STRA6LP-CCDC180 rea... | NR_036528.1 | 35.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2565
- ORF length:
- 2499
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GTCAGTGGGG AAGGTGACCC AGGTTCCGAA TGGGAAAGCC TACCAGCAGA 121 TCTTCCAGGC TGAGGTGCAG CTGGTCCACT CCCTGGCGGC CACCAGGAAG CGGGCTGCAG 181 AGCGTTCTGT GACCCTGAAG AGTGGCAGGA TACCCATGAT GAAGAAGGTG GAGACTCCTG 241 AAGGGGAGGT GATGTCTCCC CGACAGCAGA AGTGGATGCA CAGCCTCCCC AACGACTGGA 301 TCATGGAAAA CCCTGTTCTC CACAGGGAAA AGGAAAGAGC CAAGAGGGAA AAAGCCCGAG 361 AGAGTGAGAA CACCATCGCT GCCCGAGAAG TGCGGGGTCT CATGGATACT ATAGTTCCTG 421 AGAAGATAAG CACCAGCACC TTTCAAAGGC AAGCAGAACA CAAGAGGAAG AGCTACGAGC 481 GCGCTCTGGC CAGCTTTCAG GAGGAGATTG CGCAGGTGGG AAAGGAAATG GAACCTCTCA 541 TCGTGGACAC AGGGGGACTT TTTTTGAAGG AGCTGACTGA GTCTGATGAA GAAATGAACC 601 GTCTCTTCCT AAAGGTGGAA AATGACACCA ACCTTGAGGA CTACACCATC CAAGCCCTGC 661 TGGAGCTGTG GGATAAGGTG GCCGGGCGGT TACTGCTCCG GAAGCAGGAG ATTAAGGAGC 721 TGGATGAGGC CCTGCACTCG CTGGAGTTCT CCCGAACCGA TAAACTAAAA AGCGTGTTGA 781 AGAAATATGC AGAAGTCATA GAGAAAACTT CCTACCTCAT GCGGCCCGAA GTGTACAGGC 841 TGATAAATGA AGAAGCCATG GTCATGAACT ATGCCCTGCT GGGCAACCAG AAGGCTCTCG 901 CCCAGCTGTT TGTCAACCTG ATGGAGTCCA CCCTGCAGCA GGAGCTGGAC AGCCGCCACC 961 GCTGGCAAGG CTTGGTGGAC ACCTGGAAGG CTCTCAAGAA GGAGGCCCTG CTGCAGAGTT 1021 TCAGTGAGTT CATGGCCAGT GAGAGTATCC ATACTCCCCC GGCTGTGACG AAGGAGCTAG 1081 AGGTCATGCT GAAGACCCAG AACGTCCTGC AGCAAAGGCG GCTGAAGCAT CTCTGCACCA 1141 TCTGTGACCT CCTGCCCCCC AGTTACAGCA AAACTCAGCT GACTGAGTGG CATTCTTCCC 1201 TCAACTCCCT GAACAAGGAG CTAGACACCT ACCACGTGGA CTGCATGATG CGGATCCGCC 1261 TGCTGTATGA GAAGACATGG CAGGAGTGCC TGATGCATGT GCAGAATTGT AAGAAGCAGC 1321 TGCTGGACTG GAAAGCCTTC ACTGAGGAGG AGGCAGAGAC CCTGGTGAAC CAGTTCTTCT 1381 TCCAGATGGT GGGAGCACTC CAGGGCAAAG TGGAGGAGGA CCTGGAGCTC TTGGACAAAT 1441 CCTTCGAGAC TCTGGCAGAT CAGACAGAGT GGCAGAGTTC ACACCTCTTC AAGTATTTCC 1501 AGGAGGTGGT ACAACTGTGG GAGGCACACC CGAGCGAGCT GTTGGTGCAG GAGCTGGAGC 1561 TGGAGAAGAG GATGGAGCAG CACCGGCAGA AGCACAGCCT GGAGAGCCAG GTGCAGGAGG 1621 CCCACCTCGA TAGGCTCTTG GACCAACTGA GGCAGCAAAG TGACAAAGAA ACACTGGCGT 1681 TTCACCTGGA AAAGGTCAAA GATTATCTGA AGAACATGAA ATCCAGGTAT GAATGTTTTC 1741 ACACCCTCCT GACAAAGGAA GTGATGGAGT ACCCAGCGAT CATGCTGAAA GAACTCAACT 1801 CCTACAGCTC TGCCCTCAGC CAATACTTCT TTGTGCGTGA AATCTTTGAA CAGAACTTGG 1861 CTGGAGAAGT CATTTTCAAA TTCAGGCAAC CAGAAGCACA TGAAAAACCC TCCCAGAAGA 1921 GAGTGAAAAA ACTGAGGAAG AAGCAAGGGT CTAAAGAGGA CATGACCAGA AGTGAGGAAA 1981 GCATAAGTAG TGGGACAAGT ACTGCCAGGT CAGTAGAAGA GGTGGAAGAA GAAAACGATC 2041 AAGAAATGGA GTCCTTCATA ACTGAAGAGG TGCTGGGGCA GCAGAAAAAA TCTCCACTGC 2101 ATGCTAAGAT GGATGAGTCC AAAGAAGGCT CTATTCAGGG ACTGGAAGAA ATGCAGGTTG 2161 AAAGAGAGGG CTCCTTAAAC CCATCCCTGA ATGAGGAGAA TGTGAAGGGT CAAGGAGAAA 2221 AGAAGGAGGA GTCAGAGGAG GAAGATGAGA AGGAGGAAGA GGAGGAGGAG GAGAAGCTGG 2281 AGGAAGAGAA GGAGGAGAAG GAGGCACAGG AAGAGCAAGA GAGTTTATCT GTGGGTGAGG 2341 AAGAAGACAA GGAAGAGGGT CTAGAGGAGA TATACTATGA GGACATGGAG TCCTTCACAA 2401 TCTCCAGTGG AAACACTTAT TTTGTCTTTG TACCCCTGGA AGAAGAGCAT TGTAGGAAGT 2461 CCCATTCCAC CTTCTCAGCC ATGTTCATCA ACGACACTTC CAGTGCCAAG TTCATAGAAC 2521 AAGTGACAAT TCCATCGAGA CTAATTTTAG AAATTAAGAA ACAGTGCCCA ACTTTCTTGT 2581 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c