Construct: ORF ccsbBroadEn_12386

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016032.1_s300c1, BRDN0000389865
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUGT1P4-STRA6LP-CCDC180 (57653)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100499483 CCDC180 coiled-coil domain containi... NM_001348010.2 91.4% 91% (many diffs)
2 human 100499483 CCDC180 coiled-coil domain containi... NM_020893.4 48.8% 48.7% (many diffs)
3 human 57653 SUGT1P4-STRA6LP-CCDC180 SUGT1P4-STRA6LP-CCDC180 rea... NR_036529.1 39.9% (many diffs)
4 human 57653 SUGT1P4-STRA6LP-CCDC180 SUGT1P4-STRA6LP-CCDC180 rea... NR_036527.1 39.2% (many diffs)
5 human 57653 SUGT1P4-STRA6LP-CCDC180 SUGT1P4-STRA6LP-CCDC180 rea... NR_036528.1 35.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2565
ORF length:
2499
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GTCAGTGGGG AAGGTGACCC AGGTTCCGAA TGGGAAAGCC TACCAGCAGA
121TCTTCCAGGC TGAGGTGCAG CTGGTCCACT CCCTGGCGGC CACCAGGAAG CGGGCTGCAG
181AGCGTTCTGT GACCCTGAAG AGTGGCAGGA TACCCATGAT GAAGAAGGTG GAGACTCCTG
241AAGGGGAGGT GATGTCTCCC CGACAGCAGA AGTGGATGCA CAGCCTCCCC AACGACTGGA
301TCATGGAAAA CCCTGTTCTC CACAGGGAAA AGGAAAGAGC CAAGAGGGAA AAAGCCCGAG
361AGAGTGAGAA CACCATCGCT GCCCGAGAAG TGCGGGGTCT CATGGATACT ATAGTTCCTG
421AGAAGATAAG CACCAGCACC TTTCAAAGGC AAGCAGAACA CAAGAGGAAG AGCTACGAGC
481GCGCTCTGGC CAGCTTTCAG GAGGAGATTG CGCAGGTGGG AAAGGAAATG GAACCTCTCA
541TCGTGGACAC AGGGGGACTT TTTTTGAAGG AGCTGACTGA GTCTGATGAA GAAATGAACC
601GTCTCTTCCT AAAGGTGGAA AATGACACCA ACCTTGAGGA CTACACCATC CAAGCCCTGC
661TGGAGCTGTG GGATAAGGTG GCCGGGCGGT TACTGCTCCG GAAGCAGGAG ATTAAGGAGC
721TGGATGAGGC CCTGCACTCG CTGGAGTTCT CCCGAACCGA TAAACTAAAA AGCGTGTTGA
781AGAAATATGC AGAAGTCATA GAGAAAACTT CCTACCTCAT GCGGCCCGAA GTGTACAGGC
841TGATAAATGA AGAAGCCATG GTCATGAACT ATGCCCTGCT GGGCAACCAG AAGGCTCTCG
901CCCAGCTGTT TGTCAACCTG ATGGAGTCCA CCCTGCAGCA GGAGCTGGAC AGCCGCCACC
961GCTGGCAAGG CTTGGTGGAC ACCTGGAAGG CTCTCAAGAA GGAGGCCCTG CTGCAGAGTT
1021TCAGTGAGTT CATGGCCAGT GAGAGTATCC ATACTCCCCC GGCTGTGACG AAGGAGCTAG
1081AGGTCATGCT GAAGACCCAG AACGTCCTGC AGCAAAGGCG GCTGAAGCAT CTCTGCACCA
1141TCTGTGACCT CCTGCCCCCC AGTTACAGCA AAACTCAGCT GACTGAGTGG CATTCTTCCC
1201TCAACTCCCT GAACAAGGAG CTAGACACCT ACCACGTGGA CTGCATGATG CGGATCCGCC
1261TGCTGTATGA GAAGACATGG CAGGAGTGCC TGATGCATGT GCAGAATTGT AAGAAGCAGC
1321TGCTGGACTG GAAAGCCTTC ACTGAGGAGG AGGCAGAGAC CCTGGTGAAC CAGTTCTTCT
1381TCCAGATGGT GGGAGCACTC CAGGGCAAAG TGGAGGAGGA CCTGGAGCTC TTGGACAAAT
1441CCTTCGAGAC TCTGGCAGAT CAGACAGAGT GGCAGAGTTC ACACCTCTTC AAGTATTTCC
1501AGGAGGTGGT ACAACTGTGG GAGGCACACC CGAGCGAGCT GTTGGTGCAG GAGCTGGAGC
1561TGGAGAAGAG GATGGAGCAG CACCGGCAGA AGCACAGCCT GGAGAGCCAG GTGCAGGAGG
1621CCCACCTCGA TAGGCTCTTG GACCAACTGA GGCAGCAAAG TGACAAAGAA ACACTGGCGT
1681TTCACCTGGA AAAGGTCAAA GATTATCTGA AGAACATGAA ATCCAGGTAT GAATGTTTTC
1741ACACCCTCCT GACAAAGGAA GTGATGGAGT ACCCAGCGAT CATGCTGAAA GAACTCAACT
1801CCTACAGCTC TGCCCTCAGC CAATACTTCT TTGTGCGTGA AATCTTTGAA CAGAACTTGG
1861CTGGAGAAGT CATTTTCAAA TTCAGGCAAC CAGAAGCACA TGAAAAACCC TCCCAGAAGA
1921GAGTGAAAAA ACTGAGGAAG AAGCAAGGGT CTAAAGAGGA CATGACCAGA AGTGAGGAAA
1981GCATAAGTAG TGGGACAAGT ACTGCCAGGT CAGTAGAAGA GGTGGAAGAA GAAAACGATC
2041AAGAAATGGA GTCCTTCATA ACTGAAGAGG TGCTGGGGCA GCAGAAAAAA TCTCCACTGC
2101ATGCTAAGAT GGATGAGTCC AAAGAAGGCT CTATTCAGGG ACTGGAAGAA ATGCAGGTTG
2161AAAGAGAGGG CTCCTTAAAC CCATCCCTGA ATGAGGAGAA TGTGAAGGGT CAAGGAGAAA
2221AGAAGGAGGA GTCAGAGGAG GAAGATGAGA AGGAGGAAGA GGAGGAGGAG GAGAAGCTGG
2281AGGAAGAGAA GGAGGAGAAG GAGGCACAGG AAGAGCAAGA GAGTTTATCT GTGGGTGAGG
2341AAGAAGACAA GGAAGAGGGT CTAGAGGAGA TATACTATGA GGACATGGAG TCCTTCACAA
2401TCTCCAGTGG AAACACTTAT TTTGTCTTTG TACCCCTGGA AGAAGAGCAT TGTAGGAAGT
2461CCCATTCCAC CTTCTCAGCC ATGTTCATCA ACGACACTTC CAGTGCCAAG TTCATAGAAC
2521AAGTGACAAT TCCATCGAGA CTAATTTTAG AAATTAAGAA ACAGTGCCCA ACTTTCTTGT
2581ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)