Construct: ORF ccsbBroadEn_12391

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004170.1_s300c1, BRDN0000390657
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
USP37 (57695)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57695 USP37 ubiquitin specific peptidas... XM_011511541.2 46.1% 44.3% (many diffs)
2 human 57695 USP37 ubiquitin specific peptidas... XM_005246724.2 30.8% 29.8% (many diffs)
3 human 57695 USP37 ubiquitin specific peptidas... NM_020935.3 30.1% 29.1% (many diffs)
4 human 57695 USP37 ubiquitin specific peptidas... XM_005246720.3 30.1% 29.1% (many diffs)
5 human 57695 USP37 ubiquitin specific peptidas... XM_005246721.4 30.1% 29.1% (many diffs)
6 human 57695 USP37 ubiquitin specific peptidas... XM_005246722.4 30.1% 29.1% (many diffs)
7 human 57695 USP37 ubiquitin specific peptidas... XM_011511538.3 30.1% 29.1% (many diffs)
8 mouse 319651 Usp37 ubiquitin specific peptidas... NM_001310662.1 27.8% 27% (many diffs)
9 mouse 319651 Usp37 ubiquitin specific peptidas... XM_006496057.3 27.5% 26.8% (many diffs)
10 mouse 319651 Usp37 ubiquitin specific peptidas... NM_176972.4 27.2% 26.4% (many diffs)
11 mouse 319651 Usp37 ubiquitin specific peptidas... XM_006496054.3 27.2% 26.4% (many diffs)
12 mouse 319651 Usp37 ubiquitin specific peptidas... XR_373256.3 11.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
972
ORF length:
906
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TCCTCTGAAG ATACATGGTC CTATCAGAAT TCGAAGTATG CAGACTGGGA
121TTACAAAGTG GAAAGAAGGA TCCTTTGAAA TTGTAGAAAA AGAGAATAAA GTCAGCCTAG
181TAGTTCACTA CAATACTGGA GGAATTCCAA GGATATTTCA GCTAAGTCAT AACATTAAAA
241ATGTGGTGCT TCGACCCAGT GGAGCGAAAC AAAGCCGCCT AATGTTAACT CTGCAAGATA
301ACAGCTTCTT GTCTATTGAC AAAGTACCAA GTAAGGATGC AGAGGAAATG AGGTTGTTTC
361TAGATGCAGT CCATCAAAAC AGACTTCCTG CAGCCATGAA ACCGTCTCAG GGGTCTGGTA
421GTTTTGGAGC CATTCTGGGC AGCAGGACCT CACAGAAGGA AACCAGCAGG CAGCTTTCTT
481ACTCAGACAA TCAGGCTTCT GCAAAAAGAG GAAGTTTGGA AACTAAAGAT GATATTCCAT
541TTCGAAAAGT TCTTGGTAAT CCGGGTAGAG GATCGATTAA GACTGTAGCA GGAAGTGGAA
601TAGCTCGGAC GATTCCTTCT TTGACATCTA CTTCAACACC TCTTAGATCA GGGTTGCTAG
661AAAATCGTAC TGAAAAGAGG AAAAGAATGA TATCAACTGG CTCAGAATTG AATGAAGATT
721ACCCTAAGGA AAATGATTCA TCATCGAACA ACAAGGCCAT GACAGATCCC TCCAGAAAGT
781ATTTAACCAG CAGTAGAGAA AAGCAGCTGA GTTTGAAACA GTCAGAAGAG AATAGGACAT
841CAGGGCTTTT ACCTTTACAG TCATCATCCT TTTATGGTAG CAGAGCTGGA TCCAAGGAAC
901ACTCTTCTGG TGGCACTAAC TTAGACAGAT TTATTGGGTA TAAATACATA AGATACCTGC
961TAAGCACTTG TTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1021caatttgttg caacgaac

Download FASTA (ORF) (Full)