Transcript: Mouse XR_373256.3

PREDICTED: Mus musculus ubiquitin specific peptidase 37 (Usp37), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Usp37 (319651)
Length:
7177
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_373256.3
NBCI Gene record:
Usp37 (319651)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_373256.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000030862 CGCTTTGCAAACCTGCTTATT pLKO.1 1631 3UTR 100% 13.200 18.480 N Usp37 n/a
2 TRCN0000030860 CGCCTAATGTTGACTTTACAA pLKO.1 683 3UTR 100% 5.625 4.500 N Usp37 n/a
3 TRCN0000030863 GCTACAGAATTAAGTCTTCAA pLKO.1 2978 3UTR 100% 4.950 3.960 N Usp37 n/a
4 TRCN0000030859 CGGCTATATCTTCTTCTATAT pLKO.1 3182 3UTR 100% 13.200 9.240 N Usp37 n/a
5 TRCN0000030861 GCAGAAGATGATATTCCAGAA pLKO.1 2693 3UTR 100% 4.050 2.835 N Usp37 n/a
6 TRCN0000412978 CCACTCCCTCCTCGTTCAATT pLKO_005 2015 3UTR 100% 13.200 9.240 N USP37 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_373256.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12391 pDONR223 100% 11.1% None (many diffs) n/a
2 ccsbBroad304_12391 pLX_304 0% 11.1% V5 (many diffs) n/a
3 TRCN0000466917 ATATCTAGCATTCAAACTCTACAT pLX_317 38.9% 11.1% V5 (many diffs) n/a
Download CSV