Construct: ORF ccsbBroadEn_12395

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001248.1_s300c1, BRDN0000390606
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SHTN1 (57698)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57698 SHTN1 shootin 1 NM_001258299.1 100% 100%
2 human 57698 SHTN1 shootin 1 XM_005270002.4 97.3% 97.3% 1675_1719del
3 human 57698 SHTN1 shootin 1 XM_006717931.4 90.3% 90.4% 1674_1851delinsA
4 human 57698 SHTN1 shootin 1 NM_001258300.1 89.2% 89.2% 0_1ins180
5 human 57698 SHTN1 shootin 1 NM_001127211.3 88.3% 88.4% 1674_1893delinsA
6 human 57698 SHTN1 shootin 1 NM_018330.7 81.6% 81.1% (many diffs)
7 human 57698 SHTN1 shootin 1 NM_001258298.1 78.8% 78.9% 0_1ins180;1494_1713delinsA
8 mouse 71653 Shtn1 shootin 1 NM_001114312.1 78.4% 82.8% (many diffs)
9 mouse 71653 Shtn1 shootin 1 NM_175172.4 71.5% 76.3% (many diffs)
10 mouse 71653 Shtn1 shootin 1 XR_386512.3 35.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1740
ORF length:
1674
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CAGCTCGGAC GAAGAGAAGC AGCTGCAGCT CATTACCAGT CTGAAGGAGC
121AAGCAATAGG CGAATATGAA GACCTTAGAG CAGAGAACCA GAAAACAAAG GAGAAGTGTG
181ACAAAATTAG GCAAGAACGA GATGAAGCCG TTAAAAAACT GGAAGAATTT CAGAAAATTT
241CTCACATGGT CATAGAGGAA GTTAATTTCA TGCAGAACCA TCTTGAAATA GAGAAGACTT
301GTCGAGAAAG TGCTGAAGCT TTGGCAACAA AGCTAAATAA AGAAAATAAA ACGTTGAAAA
361GAATCAGCAT GTTGTACATG GCCAAGCTGG GACCAGATGT AATAACTGAA GAGATAAACA
421TTGATGATGA AGATTCGACT ACAGACACAG ACGGTGCCGC CGAGACTTGT GTCTCAGTAC
481AGTGTCAGAA GCAAATTAAA GAACTTCGAG ATCAAATTGT ATCTGTTCAG GAGGAAAAGA
541AGATTTTAGC CATTGAGCTG GAAAATCTCA AGAGCAAACT CGTAGAAGTA ATTGAAGAAG
601TAAATAAAGT TAAACAAGAA AAGACTGTTT TAAATTCAGA AGTTCTTGAA CAGAGAAAAG
661TCTTAGAAAA ATGCAATAGA GTGTCCATGT TAGCTGTAGA AGAGTATGAG GAGATGCAAG
721TAAACCTGGA GCTGGAGAAG GACCTTCGAA AGAAAGCAGA GTCATTTGCA CAAGAGATGT
781TCATTGAGCA AAACAAGCTA AAGAGACAAA GCCACCTTCT GCTGCAGAGC TCCATCCCTG
841ATCAGCAGCT TTTGAAAGCT TTAGACGAAA ATGCAAAACT CACCCAGCAA CTTGAAGAAG
901AGAGAATTCA GCATCAACAA AAGGTCAAAG AATTAGAAGA GCAACTAGAA AATGAAACAC
961TCCACAAAGA AATACACAAC CTCAAACAGC AACTGGAGCT TCTAGAGGAA GATAAAAAGG
1021AATTGGAATT GAAATATCAG AATTCTGAAG AGAAAGCCAG AAATTTAAAG CACTCTGTTG
1081ATGAACTCCA GAAACGAGTG AACCAGTCTG AGAATTCAGT ACCTCCACCA CCTCCTCCTC
1141CACCACCACT TCCCCCTCCA CCTCCCAATC CTATCCGATC CCTCATGTCC ATGATCCGGA
1201AACGATCCCA CCCCAGTGGC AGTGGTGCTA AGAAAGAAAA GGCAACTCAA CCAGAAACAA
1261CTGAAGAAGT CACAGATCTA AAGAGGCAAG CAGTTGAAGA GATGATGGAT AGAATTAAAA
1321AGGGAGTTCA TCTTAGACCC GTTAATCAGA CAGCCAGACC GAAGACAAAG CCAGAATCTT
1381CGAAAGGCTG CGAAAGTGCA GTGGATGAAC TAAAAGGAAT ACTGGGGACA CTTAACAAAT
1441CCACTAGTTC AAGAAGCTTA AAATCCCTTG ACCCTGAAAA CAGTGAAACT GAGTTAGAAA
1501GGATTTTGCG TCGCAGAAAG GTGACAGCAG AAGCAGATAG CAGTAGTCCA ACTGGGATAT
1561TAGCCACCTC AGAGTCCAAA TCCATGCCAG TGTTGGGTTC TGTATCCAGT GTAACAAAAA
1621CAGCCTTGAA CAAGAAAACT CTGGAGGCAG AATTCAACAG CCCGTCCCCC CCAACACCTG
1681AGCCAGGTGA AGGGCCCCGT AAATTGGAAG GATGCACAAG TTCCAAGGTT ACGTTTCAAT
1741ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1801acgaac

Download FASTA (ORF) (Full)