Construct: ORF ccsbBroadEn_12408
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009655.1_s300c1, BRDN0000385746
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLAMF7 (57823)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282592.2 | 100% | 100% | |
| 2 | human | 57823 | SLAMF7 | SLAM family member 7 | XM_011509829.1 | 95.7% | 95.7% | 648_686del |
| 3 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_021181.5 | 88.3% | 77.8% | 770_873del;993_1005del |
| 4 | human | 57823 | SLAMF7 | SLAM family member 7 | XM_011509828.1 | 85% | 75% | 648_686del;809_912del;1032_1044del |
| 5 | human | 57823 | SLAMF7 | SLAM family member 7 | XM_024448757.1 | 73% | 64.6% | 645_854del;980_1083del;1203_1215del |
| 6 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282589.1 | 64.2% | 48.3% | (many diffs) |
| 7 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282596.2 | 63.8% | 63.8% | 54_55ins321 |
| 8 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282590.2 | 56.4% | 46.6% | 54_55ins321;449_552del;672_684del |
| 9 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282588.1 | 55.7% | 55.7% | 375_376ins393 |
| 10 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282594.1 | 54.3% | 44.9% | (many diffs) |
| 11 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282591.1 | 53.4% | 35.9% | (many diffs) |
| 12 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282593.1 | 50.3% | 50.3% | 54_55ins321;324_325ins120 |
| 13 | human | 57823 | SLAMF7 | SLAM family member 7 | NM_001282595.1 | 48.3% | 38.7% | 0_1ins402;368_471del;591_603del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 954
- ORF length:
- 888
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGGTTCCCCA ACATGCCTCA CCCTCATCTA TATCCTTTGG CAGCTCACAG 121 GGTCAGCAGC CTCTGGACCC GTGAAAGAGC TGGTCGGTTC CGTTGGTGGG GCCGTGACTT 181 TCCCCCTGAA GTCCAAAGTA AAGCAAGTTG ACTCTATTGT CTGGACCTTC AACACAACCC 241 CTCTTGTCAC CATACAGCCA GAAGGGGGCA CTATCATAGT GACCCAAAAT CGTAATAGGG 301 AGAGAGTAGA CTTCCCAGAT GGAGGCTACT CCCTGAAGCT CAGCAAACTG AAGAAGAATG 361 ACTCAGGGAT CTACTATGTG GGGATATACA GCTCATCACT CCAGCAGCCC TCCACCCAGG 421 AGTACGTGCT GCATGTCTAC GAGCACCTGT CAAAGCCTAA AGTCACCATG GGTCTGCAGA 481 GCAATAAGAA TGGCACCTGT GTGACCAATC TGACATGCTG CATGGAACAT GGGGAAGAGG 541 ATGTGATTTA TACCTGGAAG GCCCTGGGGC AAGCAGCCAA TGAGTCCCAT AATGGGTCCA 601 TCCTCCCCAT CTCCTGGAGA TGGGGAGAAA GTGATATGAC CTTCATCTGC GTTGCCAGGA 661 ACCCTGTCAG CAGAAACTTC TCAAGCCCCA TCCTTGCCAG GAAGCTCTGT GAAGGTGCTG 721 CTGATGACCC AGATTCCTCC ATGGTCCTCC TGTGTCTCCT GTTGGTGCCC CTCCTGCTCA 781 GTCTCTTTGT ACTGGGGCTA TTTCTTTGGT TTCTGAAGAG AGAGAGACAA GAAGAGAACA 841 ATCCTAAAGG AAGATCCAGC AAATACGGTT TACTCCACTG TGGAAATACC GAAAAAGATG 901 GAAAATCCCC ACTCACTGCT CACGATGCCA GACACACCAA GGCTATTTGC CTATGCCCAA 961 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac