Transcript: Human NM_001282590.2

Homo sapiens SLAM family member 7 (SLAMF7), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
SLAMF7 (57823)
Length:
2386
CDS:
56..742

Additional Resources:

NCBI RefSeq record:
NM_001282590.2
NBCI Gene record:
SLAMF7 (57823)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282590.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373542 AGATCCAGCAAATACGGTTTA pLKO_005 625 CDS 100% 10.800 15.120 N SLAMF7 n/a
2 TRCN0000061175 CCCTCACACTAATAGAACAAT pLKO.1 595 CDS 100% 5.625 4.500 N SLAMF7 n/a
3 TRCN0000373614 CAGACACACCAAGGCTATTTG pLKO_005 702 CDS 100% 13.200 9.240 N SLAMF7 n/a
4 TRCN0000061174 GCAGCCAATGAGTCCCATAAT pLKO.1 242 CDS 100% 13.200 9.240 N SLAMF7 n/a
5 TRCN0000061176 GTCGGGAAACTCCTAACATAT pLKO.1 537 CDS 100% 13.200 9.240 N SLAMF7 n/a
6 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 1754 3UTR 100% 4.950 2.475 Y CFLAR n/a
7 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 1754 3UTR 100% 4.950 2.475 Y C19orf31 n/a
8 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 1752 3UTR 100% 4.950 2.475 Y ERN2 n/a
9 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 1752 3UTR 100% 4.950 2.475 Y P3H4 n/a
10 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 1752 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282590.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12408 pDONR223 100% 56.4% 46.6% None 54_55ins321;449_552del;672_684del n/a
2 ccsbBroad304_12408 pLX_304 0% 56.4% 46.6% V5 54_55ins321;449_552del;672_684del n/a
3 TRCN0000475047 AACGTCATTATTTCTCCGTAGGCC pLX_317 40% 56.4% 46.6% V5 54_55ins321;449_552del;672_684del n/a
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