Construct: ORF ccsbBroadEn_12419
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006721.1_s300c1, BRDN0000388577
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SINHCAF (58516)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | NM_001135811.1 | 33% | 33% | 1_444del |
| 2 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | NM_001135812.2 | 33% | 33% | 1_444del |
| 3 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | NM_021238.2 | 33% | 33% | 1_444del |
| 4 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | XM_017019758.2 | 33% | 33% | 1_444del |
| 5 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | XM_017019759.2 | 33% | 33% | 1_444del |
| 6 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | XM_017019760.1 | 33% | 33% | 1_444del |
| 7 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | XM_017019761.1 | 33% | 33% | 1_444del |
| 8 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | XM_017019762.2 | 33% | 33% | 1_444del |
| 9 | human | 58516 | SINHCAF | SIN3-HDAC complex associate... | XM_011520803.2 | 22.2% | 22.2% | 1_765del |
| 10 | mouse | 56306 | Fam60a | family with sequence simila... | NM_019643.3 | 30.3% | 31.6% | (many diffs) |
| 11 | mouse | 56306 | Fam60a | family with sequence simila... | XM_006507074.3 | 30.3% | 31.6% | (many diffs) |
| 12 | mouse | 56306 | Fam60a | family with sequence simila... | XM_006507075.2 | 30.3% | 31.6% | (many diffs) |
| 13 | mouse | 56306 | Fam60a | family with sequence simila... | XM_006507073.3 | 19% | 19.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 285
- ORF length:
- 219
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TTCTGGTTCT AACAGAACAC CAGTTTTTTC CTTTTTAGAT CTCACTTACT 121 GGAAAAGACA GAAGATATGT TGTGGGATCA TCTATAAAGG CCGTTTTGGG GAAGTCCTCA 181 TTGACACACA TCTCTTCAAG CCTTGCTGCA GCAATAAGAA AGCAGCTGCT GAGAAGCCAG 241 AGGAGCAGGG GCCAGAGCCT CTGCCCATCT CCACTCAGGA GTGGTGCCCA ACTTTCTTGT 301 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c