Construct: ORF ccsbBroadEn_12441
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014164.1_s300c1, BRDN0000395060
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RBM26 (64062)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001286632.1 | 100% | 100% | |
| 2 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535192.3 | 100% | 100% | |
| 3 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_022118.5 | 99.6% | 99.6% | 1852_1853insAGGTAATGC |
| 4 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535193.3 | 99.6% | 99.6% | 1852_1853insAGGTAATGC |
| 5 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020699.2 | 99.4% | 99.4% | 1274_1288del |
| 6 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020694.2 | 98.9% | 98.9% | 1132_1161del |
| 7 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020693.2 | 98.4% | 98.4% | 1132_1161del;1304_1318del |
| 8 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535191.3 | 98.1% | 98.1% | 1132_1161del;1304_1318del;1897_1898insAGGTAATGC |
| 9 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001366735.2 | 97.6% | 97.6% | 1985_2056del |
| 10 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535188.3 | 97.6% | 97.6% | 1985_2056del |
| 11 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020698.2 | 97.5% | 96.3% | (many diffs) |
| 12 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020692.2 | 97.3% | 97.3% | 1852_1853insAGGTAATGC;1976_2047del |
| 13 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020700.2 | 97.2% | 96% | (many diffs) |
| 14 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535185.3 | 97.1% | 97.1% | 1274_1288del;2000_2071del |
| 15 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001286631.1 | 96.8% | 96.8% | 1274_1288del;1867_1868insAGGTAATGC;1991_2062del |
| 16 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535187.3 | 96.8% | 96.8% | 1274_1288del;1867_1868insAGGTAATGC;1991_2062del |
| 17 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020690.2 | 96.6% | 96.6% | 1132_1161del;2015_2086del |
| 18 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020696.2 | 96.6% | 95.4% | (many diffs) |
| 19 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020691.2 | 96.3% | 96.3% | 1132_1161del;1882_1883insAGGTAATGC;2006_2077del |
| 20 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020695.2 | 96.3% | 95.1% | (many diffs) |
| 21 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_005266491.5 | 96.1% | 96.1% | 1132_1161del;1304_1318del;2030_2101del |
| 22 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535180.3 | 96.1% | 96.1% | 1132_1161del;1304_1318del;2030_2101del |
| 23 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020688.2 | 96.1% | 96.1% | 1132_1161del;1304_1318del;2030_2101del |
| 24 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_024449393.1 | 96.1% | 96.1% | 1132_1161del;1304_1318del;2030_2101del |
| 25 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535189.2 | 96.1% | 94.9% | (many diffs) |
| 26 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535183.3 | 95.8% | 95.8% | (many diffs) |
| 27 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535190.2 | 95.8% | 94.6% | (many diffs) |
| 28 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535186.3 | 95.2% | 94.1% | (many diffs) |
| 29 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535184.2 | 94.8% | 93.6% | (many diffs) |
| 30 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535182.2 | 94.3% | 93.2% | (many diffs) |
| 31 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020697.2 | 94.2% | 93.9% | (many diffs) |
| 32 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020689.2 | 94% | 92.9% | (many diffs) |
| 33 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535179.2 | 93.9% | 92.7% | (many diffs) |
| 34 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_005266497.2 | 93.8% | 93.5% | (many diffs) |
| 35 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_006719857.2 | 93.8% | 93.4% | (many diffs) |
| 36 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535181.2 | 93.6% | 92.4% | (many diffs) |
| 37 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020703.2 | 88.4% | 87.7% | (many diffs) |
| 38 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020701.2 | 87.5% | 86.8% | (many diffs) |
| 39 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020702.2 | 87.5% | 86.8% | (many diffs) |
| 40 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535195.1 | 66% | 64.9% | (many diffs) |
| 41 | mouse | 74213 | Rbm26 | RNA binding motif protein 26 | NM_134077.4 | 91.6% | 96.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3018
- ORF length:
- 2949
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTTTCTAAA ATGATCATTG AAAACTTCGA GGCACTCAAG TCCTGGCTCA 121 GCAAGACTCT CGAGCCCATC TGTGATGCAG ATCCATCCGC CCTAGCAAAA TATGTTCTGG 181 CTTTGGTAAA GAAAGACAAA AGTGAAAAAG AGTTAAAGGC ATTATGTATT GATCAGCTGG 241 ATGTATTTCT TCAGAAAGAG ACACAGATAT TTGTGGAAAA ACTTTTTGAT GCTGTGAATA 301 CAAAGAGTTA CCTACCTCCT CCAGAGCAGC CATCATCAGG AAGCCTGAAG GTAGAATTTT 361 TTCCACACCA AGAAAAAGAT ATAAAGAAGG AAGAGATCAC TAAGGAGGAA GAGCGAGAGA 421 AGAAGTTTTC TAGAAGGCTA AATCACAGTC CTCCCCAGTC AAGCTCCCGA TACAGGGAAA 481 ATAGAAGCCG TGATGAGAGG AAAAAAGATG ATCGTTCTCG CAAAAGAGAT TATGATCGAA 541 ACCCTCCTCG AAGAGATTCA TACAGAGACC GGTACAATAG AAGACGAGGG CGGAGTCGCA 601 GTTATAGCAG GAGTCGAAGT CGAAGTTGGA GTAAAGAGAG GCTTCGTGAG AGGGACAGAG 661 ATAGAAGCAG GACTAGAAGC AGAAGCAGAA CACGAAGCAG GGAAAGGGAT CTGGTAAAAC 721 CTAAATATGA CCTGGATAGA ACAGATCCAT TAGAAAATAA TTATACTCCA GTCTCTTCGG 781 TACCTAGTAT TTCATCTGGC CACTACCCTG TACCTACTTT GAGCAGCACT ATTACAGTAA 841 TTGCTCCTAC TCATCATGGA AACAACACTA CCGAAAGTTG GTCTGAATTT CATGAAGACC 901 AAGTGGACCA TAACTCTTAC GTAAGACCAC CCATGCCAAA GAAACGGTGT AGAGACTATG 961 ATGAAAAGGG TTTTTGTATG AGAGGAGACA TGTGTCCTTT TGATCATGGA AGTGATCCAG 1021 TAGTTGTAGA AGATGTGAAT CTTCCTGGTA TGCTGCCTTT CCCAGCACAG CCTCCTGTTG 1081 TTGAAGGACC ACCTCCTCCT GGACTCCCCC CACCTCCACC AATTCTTACA CCCCCACCTG 1141 TGAATCTCAG GCCCCCAGTA CCACCGCCAG GTCCATTGCC ACCCAGTCTC CCACCTGTTA 1201 CAGGACCACC ACCTCCACTT CCTCCTTTGC AGCCATCTGG CATGGATGCT CCTCCAAACT 1261 CTGCAACCAG TTCTGTTCCT ACTGTAGTAA CAACTGGCAT TCATCACCAG CCTCCTCCTG 1321 CTCCACCCTC TCTTTTTACT GCAGATACAT ATGACACAGA TGGCTACAAT CCTGAAGCCC 1381 CAAGCATAAC AAACACTTCC AGACCTATGT ATAGACACAG AGTGCATGCA CAAAGGCCCA 1441 ACTTGATAGG ACTAACATCA GGGGATATGG ATTTGCCACC CAGAGAAAAG CCTCCCAATA 1501 AAAGCAGTAT GAGGATAGTA GTGGACTCAG AATCAAGGAA AAGAACCATT GGTTCTGGAG 1561 AGCCTGGAGT TCCTACAAAG AAGACTTGGT TTGATAAACC AAATTTTAAT AGAACAAACA 1621 GCCCAGGCTT TCAGAAGAAG GTTCAATTTG GAAATGAAAA TACCAAGCTT GAACTTAGAA 1681 AAGTTCCTCC AGAATTAAAT AATATCAGCA AACTTAATGA ACATTTTAGT CGATTTGGAA 1741 CCTTGGTTAA CTTACAGGTT GCTTATAATG GTGATCCTGA AGGTGCCCTA ATCCAATTTG 1801 CAACATACGA AGAAGCAAAG AAAGCAATAT CAAGTACGGA AGCAGTATTA AACAATCGCT 1861 TTATTAAGGT TTATTGGCAC AGAGAAGGAA GCACCCAACA GTTACAAACT ACTTCTCCAA 1921 AGGTAATGCA GCCTTTAGTC CAGCAGCCCA TTTTGCCTGT TGTGAAGCAG TCAGTCAAAG 1981 AGCGGCTGGG TCCAGTACCT TCAAGTACTA TTGAACCTGC AGAAGCCCAG AGTGCCTCTT 2041 CAGACCTTCC TCAGGTGTTG TCTACATCTA CTGGCCTAAC AAAAACAGTG TATAATCCAG 2101 CTGCTTTGAA GGCTGCACAG AAAACCTTAC TTGTTTCCAC CTCTGCAGTT GATAATAATG 2161 AAGCACAGAA AAAAAAACAG GAGGCATTGA AACTTCAGCA GGATGTAAGG AAAAGGAAAC 2221 AAGAAATTTT AGAAAAGCAC ATTGAAACAC AGAAGATGTT AATTTCAAAA CTGGAGAAAA 2281 ACAAAACAAT GAAGTCTGAA GATAAAGCAG AAATAATGAA AACTTTAGAG GTTTTGACAA 2341 AAAATATTAC CAAGTTGAAA GATGAGGTCA AAGCTGCTTC TCCTGGACGC TGTCTTCCAA 2401 AAAGTATAAA AACCAAGACT CAGATGCAGA AGGAATTACT TGACACAGAA CTGGATTTAT 2461 ATAAGAAGAT GCAGGCTGGA GAAGAAGTCA CTGAACTTAG GAGAAAGTAT ACAGAATTAC 2521 AGCTGGAAGC TGCCAAACGA GGGATTCTTT CATCTGGTCG GGGCAGAGGA ATTCATTCAA 2581 GAGGTCGAGG TGCAGTTCAT GGCCGAGGCA GGGGGCGAGG GCGAGGGCGA GGTGTGCCTG 2641 GTCATGCTGT GGTGGATCAC CGTCCCAGGG CATTGGAGAT TTCTGCATTT ACGGAGAGCG 2701 ATAGAGAAGA TCTTCTTCCT CATTTTGCGC AATATGGTGA AATTGAAGAT TGTCAGATTG 2761 ATGATTCCTC ACTTCATGCA GTAATTACAT TCAAGACAAG AGCAGAAGCT GAAGCAGCTG 2821 CAGTTCATGG AGCTCGTTTC AAAGGGCAAG ATCTAAAACT GGCATGGAAT AAACCAGTAA 2881 CTAATATTTC AGCTGTTGAA ACAGAAGAAG TTGAGCCTGA TGAAGAAGAA TTTCAGGAAG 2941 AGTCTTTGGT GGATGACTCA TTACTTCAAG ATGATGATGA AGAAGAAGAG GACAATGAAT 3001 CTCGTTCTTG GAGAAGATTG CCAACTTTTT TGTACAAAGT tggcattata agaaagcatt 3061 gcttatcaat ttgttgcaac gaac