Construct: ORF ccsbBroadEn_12469
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005816.1_s300c1, BRDN0000388581
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARAP3 (64411)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_011537677.2 | 5.4% | 1.1% | 1_3346del;3569_4047del |
| 2 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_005268499.1 | 5% | 1% | 1_3697del;3920_4398del |
| 3 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_006714792.2 | 5% | 1% | 1_3718del;3941_4419del |
| 4 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_005268498.2 | 4.8% | 1% | 1_3871del;4094_4572del |
| 5 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | NM_022481.6 | 4.7% | 1% | 1_3931del;4154_4632del |
| 6 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_005268497.2 | 4.6% | 1% | (many diffs) |
| 7 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | NM_001205336.1 | 4.6% | 1.2% | (many diffs) |
| 8 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525491.3 | 4.6% | 1.2% | (many diffs) |
| 9 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525492.3 | 4.6% | 1.2% | (many diffs) |
| 10 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | NM_139206.2 | 4.4% | 1.2% | (many diffs) |
| 11 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525489.1 | 4.4% | 1.2% | (many diffs) |
| 12 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525486.1 | 4.4% | 1.2% | (many diffs) |
| 13 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525487.3 | 4.4% | 1.2% | (many diffs) |
| 14 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525488.2 | 4.4% | 1.2% | (many diffs) |
| 15 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525490.1 | 4.2% | 1.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 288
- ORF length:
- 222
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA ATGTGGGATT GGACCACCAG CATCCTTAAA GCCCAGCACG ATGACCAGCA 121 GCCAGTGGTC TTACGACGCC ATTCCTCCTC TGACCTTGCC CGTCAGAAGT TTGGCACTAT 181 GCCTTTGCTG CCTATCCGTG GGGATGACAG TGGAGCCACC CTCCTCTCTG CCAATCAGAC 241 CCTGCGGCGA CTACACAACC GGAGGACCCT GTCCATGTTC TTTCCAATGC CCAACTTTCT 301 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac